Comparison parameters

Select the number of windows that you want to use for SNP-comparison 2 3 4 5 6

Chromosomal region parameters

based on dbSNP build 126 corresponding to NCBI mouse genome build 35.1

Chromosome number: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 X Y MT

Region from to

Filter parameters for general SNP entries

Do not show Indels
Do not show SNPs without genotype information
Do not show SNPs with inconsistencies between general SNP description and actual SNP genotypes
Do not show SNPs with unclear map position

Filter parameters for specific SNP genotypes

Do not show heterozygous genotypes
Do not show long genotypes
Do not show genotypes with genotype inconsistencies between different reports

Maximum allele frequency of major allele (0.5 - 1)

minimal number of lines for which a SNP has to be reported

minimal number of submissions that report a SNP

maximal percentage of unknown nucleotides within a 20 bp 5' and 3' flanking region

maximal percentage of masked nucleotide sequence within a 20 bp 5' and 3' flanking region