Jan Krumsiek
PhD student
Dipl. Bioinf
Email me
Tel.: +49 (0) 89 3187 3641
Room: 158
Research
- Modeling of metabolic networks based on metabolomics data
- Modeling of hematopoietic stem cell differentiation
- Quantifying discrete models of biological systems
- Odefy
Publications
- From Discrete to Continuous Gene Regulation Models – A Tutorial Using the Odefy Toolbox.
Krumsiek J, Wittmann DM, Theis FJ
in Applications of MATLAB in Science and Engineering, 2011 [ PDF ]
- An ISA Algorithm With Unknown Group Sizes Identifies Meaningful Clusters in Metabolomics Data.
Gutch H, Krumsiek J, Theis F
EUSIPCO - European Signal Processing Conference, 2011 [ PDF ]
- Efficient fluorescence image normalization for time lapse movies.
Schwarzfischer M, Marr C, Krumsiek J, Hoppe PS, Schroeder T, Theis FJ
ICSB 2011 workshop: Microscopic Image Analysis with Applications in Biology, 2011 [ PDF ]
- Hierarchical Differentiation of Myeloid Progenitors Is Encoded in the Transcription Factor Network.
Krumsiek J, Marr C, Schroeder T, Theis FJ
PLoS ONE, 6:e22649, 2011 [ PDF | PubMed ]
- Discovery of Sexual Dimorphisms in Metabolic and Genetic Biomarkers.
Mittelstrass K, Ried JS, Yu Z, Krumsiek J, Gieger C, Prehn C, Roemisch-Margl W, Polonikov A, Peters A, Theis FJ, Meitinger T, Kronenberg F, Weidinger S, Wichmann HE, Suhre K, Wang-Sattler R, Adamski J, Illig T
PLoS Genet, 7:e1002215, 2011 [ PDF | PubMed ]
- Gaussian graphical modeling reveals specific lipid correlations in glioblastoma cells.
Mueller NS, Krumsiek J, Theis FJ, Bohm C, Meyer-Base A
Independent Component Analyses, Wavelets, Neural Networks, Biosystems, and Nanoengineering IX, 8058:805819, 2011 [ PDF ]
- Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data.
Krumsiek J, Suhre K, Illig T, Adamski J, Theis FJ
BMC Syst Biol, 5:21, 2011 [ PDF | PubMed ]
- Odefy--from discrete to continuous models.
Krumsiek J, Pölsterl S, Wittmann DM, Theis FJ
BMC Bioinformatics, 11:233, 2010 [ PDF | PubMed ]
- Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects.
Lutter D, Marr C, Krumsiek J, Lang EW, Theis FJ
BMC Genomics, 11:224, 2010 [ PDF | PubMed ]
- Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling.
Wittmann DM, Krumsiek J, Saez-Rodriguez J, Lauffenburger DA, Klamt S, Theis FJ
BMC Syst Biol, 3:98, 2009 [ PDF | PubMed ]
- Bootstrapping the interactome: unsupervised identification of protein complexes in yeast.
Friedel CC, Krumsiek J, Zimmer R
J Comput Biol, 16:971--987, 2009 [ PDF | PubMed ]
- ProCope--protein complex prediction and evaluation.
Krumsiek J, Friedel CC, Zimmer R
Bioinformatics, 24:2115--2116, 2008 [ PDF | PubMed ]
- Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast.
Friedel CC, Krumsiek J, Zimmer R
RECOMB 2008, LNBI 4955:3-16, 2008 [ PDF ]
- SIMAP--structuring the network of protein similarities.
Rattei T, Tischler P, Arnold R, Hamberger F, Krebs J, Krumsiek J, Wachinger B, Stümpflen V, Mewes W
Nucleic Acids Res, 36:D289--D292, 2008 [ PDF | PubMed ]
- Gepard: a rapid and sensitive tool for creating dotplots on genome scale.
Krumsiek J, Arnold R, Rattei T
Bioinformatics, 23:1026--1028, 2007 [ PDF | PubMed ]
