Molecular Microbial Ecology
Other publications
-- 2012 --
Rothballer M., Engel M., Strik D.P., Timmers R., Schloter M., Hartmann A.(2011). Comparison of bacterial rhizosphere communities from plant microbial fuel cells with different current production by 454 amplicon sequencing. Commun. Agric. Appl. Biol. Sci. 76(2): 31-32
--2009--
Hartmann A., and Schmid M. (2009). Fluorescence in situ hybridization (FISH) technique for the investigation of the structure and function of microbial communities. In: A Textbook of Molecular Biotechnology (eds. Chauhan, A.K., Varma, A.) New Delhi, India: I. K. International Publishing House, chapter 55, pp. 1207-1221
Fekete A., Rothballer M., Hartmann A., and Schmitt-Kopplin P. (2010). Identification of bacterial autoinducers. In: Bacterial Signaling (eds.: R. Krämer, K. Jung). Weinheim, Germany: Wiley-VCH Verlag, pp. 95-111
Rothballer M., Schmid M., and Hartmann A. (2008). Diazotrophic bacterial endophytes in Gramineae and other plants. In: Microbiology Monographs: Procaryotic endosymbionts in plants (ed. K. Pawlowski). Heidelberg, Germany: Springer Verlag, pp. 273-302
--2007--
Dazzo F.B., Schmid M., and Hartmann A. (2007). Immunofluorescence microscopy and fluorescence in situ hybridization combined with CMEIAS and other image analysis tools for soil- and plant-associated microbial autecology. In: Manual of Environmental Microbiology, 3rd edition (eds. C. J. Hurst, R. L. Crawford, J. L. Garland, D. A. Lipson, A.L. Mills, L. D. Stetzenbach) Washington DC, USA: ASM-Press, pp. 712-733
Van Elsas J.D., Torsvik V., Hartmann A., Ovreas L., and Jansson J. (2007). The bacteria and archeae in soil. In: Modern Soil Microbiology, 2nd edition (eds. J. D. van Elsas, J. K. Jansson, J. Trevors). Boca Raton, Florida, USA: CRC-Press, chapter 12, pp. 317-335
Rothballer M., and Hartmann A. (2007). In situ detection of bacterial gene expression in the rhizosphere using gfp promoter fusions. In: COST 631 – Handbook of Methods Used in Rhizosphere Research (eds. J. Luster, R. Finlay), Swiss Federal Research Institute WSL, Birmensdorf, Switzerland, Chapter 4.1.: Microbial growth and visualization of bacteria and fungi, pp. 403-404
Schmid M., Rothballer M., and Hartmann A. (2007). Analysis of microbial communities in soil microhabitats using fluorescence in situ hybridization. In: Modern Soil Microbiology, 2nd edition (eds.: J. D. van Elsas, J. K. Jansson, J. Trevors). Boca Raton, Florida, USA: CRC-Press, chapter 12, pp.317-335
Hartmann A., Smalla K., and Sørensen J. (2007). Microbial diversity in the rhizosphere: highly resolving molecular methodology to study plant-beneficial rhizosphere bacteria. In: Biodiversity in Agricultural Production Systems (eds.: G. Benckiser, S. Schnell). Boca Raton, Florida, USA: CRC Press and Taylor&Francis Group, pp. 101-130
Schmid M., and Hartmann A. (2007). Molecular phylogeny and ecology of root associated diazotrophic alpha- and beta-proteobacteria. In: Associative and Endophytic Nitrogen-fixing Bacteria and Cyanobacterial Associations (eds.: C. Elmerich, W. E. Newton). New York, USA: Springer Verlag, chapter 2, pp. 21-40
--2006--
Schmid M., Selesi D., Rothballer M., Schloter M., Lee N., Kandeler E., and Hartmann A. (2006). Localization and visualization of microbial community structure and activity in soil microhabitats. In: Soil Biology, Volume 6. Intestinal Microorganisms of Soil Invertebrates (eds.: H. König, A. Varma). New York, USA: Springer Verlag, pp. 439-461
--2005--
Schmid M., Baldani J.I., and Hartmann A. (2005). The genus Herbaspirillum. In: The Prokaryotes, volume 5: Proteobacteria: Alpha and Beta Subclasses (eds. M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, E. Stackebrandt). New York, USA: Springer Verlag, pp. 141-150
Moenne-Loccoz Y., Woo S.L., Okon Y., Bally R., Lorito M., Lemanceau P., and Hartmann A. (2005). Free-living plant-beneficial microorganisms and soil quality. In: Microbiological Methods for Assessing Soil Quality (eds.: J. Bloem, D. W. Hopkins, A. Benedetti). Wallingford, UK: CABI Publishing, chapter 9.5, p. 368
Baldani J.I., Krieg N.R., Baldani V.L.D., Hartmann A., and Döbereiner J. (2005). Genus II. Azospirillum. In: Bergey´s Manual of Systematic Bacteriology, 2nd edition, Vol. II (eds.: D. J. Brenner, N. R. Krieg, J. T. Staley). New York, USA: Springer Verlag, pp. 7-26
--2004--
Schmid M., Rothballer M., Aßmus B., Hutzler P., Schloter M., and Hartmann A. (2004). Detection of microbes by confocal laser scanning microscopy. In: Molecular Microbial Ecology Manual, 2nd edition (eds.: G. A. Kowalchuk, F. J. De Bruijn, I. M. Head, A. D. L. Akkermans, J. D. van Elsas). Dordrecht, The Netherlands: Kluwer Academic Publishers, chapter 4.03, pp. 875-910
Hartmann A., Pukall R., Rothballer M., Gantner S., Metz S., Schloter M., and Mogge B. (2004). Microbial community analysis in the rhizosphere by in situ and ex situ application of molecular probing, biomarker and cultivation techniques. In: Plant Surface Microbiology (eds.: A. Varma, L. Abott, D. Werner, R. Hampp). Berlin, Germany: Springer Verlag, pp. 449-469
Hartmann A., Gantner S., Schuhegger R., Steidle A., Dürr C., Schmid M., Dazzo F.B., Eberl L., and Langebartels C. (2004). N-Acyl homoserine lactones of rhizosphere bacteria trigger systemic resistance in tomato plants. In: Biology of Plant-Microbe Interactions, Volume 4 (eds.: B. Lugtenberg, I. Tikhonovich, N. Provorov). Saint Paul, Minnesota, USA: APS Press, pp. 554-556
Hartmann A. (2004). Horizontaler Gentransfer: ein natürlicher Prozess. GSF-spezial "Grüne Gentechnik", S. 59-64
--2003--
Hartmann A., and Baldani J. I. (2003). The Genus Azospirillum. In: The Prokaryotes, volume 5: Proteobacteria: Alpha and Beta Subclasses (eds. M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, E. Stackebrandt). New York, USA: Springer-Verlag, pp. 114-140
--2001--
Hartmann A., and Schloter M. (2001). Wirkungen auf die Bodenmikroflora. In: Handbuch der Umweltveränderungen und Ökotoxikologie, Band II: Terrestrische Ökosysteme. (Hrsg. R. Guderian). Berlin, Deutschland: Springer-Verlag, Kapitel II 2.2, S. 91-106
--2000--
Müller E., Aßmus B., Hartmann A., and Seiler K.-P. (2000). The in situ detection of a microbial biofilm community on Karst rock coupon in a groundwater habitat. In: Biofilms: Investigative Methods & Applications (eds.: H.-C. Fleming, U. Szewzyk, T. Griebe). Lancaster, Pennsylvania, USA: Technomic Publishing Co., pp. 225-230
Hausner M., Lawrence J.R., Wolfaardt G.M., Schloter M., Seiler K.-P., and Hartmann A. (2000). The use of immunological techniques and scanning confocal laser microscopy for the characterization of Agrobacterium tumefaciens and Pseudomonas fluorescens in atrazine-utilizing biofilms. In: Biofilms: Investigative Methods & Applications (eds.: H.-C. Fleming, U. Szewzyk, T. Griebe). Lancaster, Pennsylvania, USA: Technomic Publishing Co., pp. 143-153
Hartmann A., Stoffels M., Eckert B., Kirchhof G., and Schloter M. (2000). Analysis of the presence and diversity of diazotrophic bacteria. In: Prokaryotic Nitrogen Fixation (ed.: E. W. Triplett). Wymondham, UK: Horizon Scientific Press, pp. 727-736
Hartmann A., Chatzinotas A., Aßmus B., and Kirchhof G. (2000). Molecular microbial ecology studies of diazotrophs associated with non-legumes with special reference to endophytic diazotrophs. In: Microbial Interactions in Agriculture and Forestry, Volume II (eds.: N.S. Subba Rao, Y.R. Dommergues). Enfield, New Hampshire, USA: Science Publishers, pp. 1-14
Eckert B., Kirchhof G., Stoffels M., Baldani J.I., Weber B.O., and Hartmann A. (2000). Neue diazotrophe Bakterien aus den Rohstoffpflanzen Miscanthus sinensis und Pennisetum purpureum. In: Rhizodeposition und Stoffverwertung (Hrsg. W. Merbach, L. Wittenmayer, J. Augustin). Stuttgart / Leipzig, Deuscthland: B.G. Teubner Verlag, S. 103-109
--before 2000--
Hartmann A., Schloter M., Bergmüller C., Mölter K., Zelles L., and Munch J.C. (1999). Diversität der Mikroflora von Böden und Sedimenten als ökotoxikologischer Belastungsparameter. In: Ökotoxikologie - ökosystemare Ansätze und Methoden (Hrsg.: J. Oehlmann, B. Markert). Landsberg / Lech, Deutschland: Ecomed-Verlag, S. 200-207
Hartmann A., Lawrence J.R., Aßmus B., and Schloter M. (1997). Detection of microbes by laser confocal microscopy. In: Molecular Microbial Ecology Manual (eds.: A. Akkermans, J.D. van Elsas, F.J. de Bruijns). Dordrecht, The Netherlands: Kluwer Academic Publishers, chapter 4.1.10., pp. 1-34
Hartmann A., Aßmus B., Kirchhof G., and Schloter M. (1997). Direct approaches for studying soil microbes. In: Modern Soil Microbiology (eds.: J.D. van Elsas, J.T. Trevors, E.M.H. Wellington). New York: Marcel Dekker, 279-309
Schloter M., Bode W., and Hartmann A. (1996). Identification and quantification with monoclonal antibodies. In: Methods in Soil Biology (eds.: F. Schinner, R. Öhlinger, E. Kandeler, R. Margesin). Berlin / Heidelberg, Germany: Springer Verlag, pp. 41-46
Lebuhn M., and Hartmann A. (1996). Auxins, L-tryptophan and related indolic and phenolic catabolites. In: Methods in Soil Biology (eds.: F. Schinner, R. Öhlinger, E. Kandeler, R. Margesin). Berlin / Heidelberg, Germany: Springer Verlag, pp. 268-280
Hartmann A. (1996). Biotechnological aspects of diazotrophic bacteria associated with rice. In: Biological Nitrogen Fixation associated with Rice Production (eds.: M. Rahman et al.). Dordrecht, The Netherlands: Kluwer Academic Publishers, pp. 211-223
Steinberg C.E.W., Brüggemann R., Hartmann A., Heller W., Kirchner M., Lienert D., Müller K., Pestlin G., Scheunert I., Seiler K.-P., Ernst D., Spieser O.H., and Klein J. (1995). Ökotoxikologische Testverfahren. In: Handbuch des Umweltschutzes - 79. Erg. Lfd. 6/95. Landsberg / Lech, Deutschland: Ecomed-Verlag, S. 1-102
Albers B.P., Hartmann A., and Beese F. (1995). Anaerobic heat output. In: Methods in Applied Soil Microbiology and Biotechnology (eds.: K. Alef, P. Nannipieri). London, UK: Academic Press, pp. 304-306
Hartmann A., and Zimmer W. (1994). Physiology of Azospirillum. In: Azospirillum / Plant Associations (ed.: Y. Okon). Boca Raton, Florida, USA: CRC-Press, pp. 15-39
Hartmann A. (1994). Molecular approaches for the investigation of the genetic composition in aquatic ecosystems. In: Acidification of Freshwater Ecosystems: Implication for the Future (eds.: C.E.W. Steinberg, R.F. Wright). Chichester, UK: John Wiley, pp. 247-257
Schloter M., Bode W., and Hartmann A. (1993). Identifizierung und Quantifizierung von Bodenbakterien mit monoklonalen Antikörpern. In: Biologische Arbeitsmethoden (2. Auflage) (Hrsg.: F. Schinner, R. Öhlinger, E. Kandeler, R. Margesin). Berlin, Deutschland: Springer Verlag, S. 44-50
Hartmann A. (1993). Ökologie von Mikroorganismen. In: Handbuch zur Ökologie (Hrsg.: W. Kuttler). Berlin, Deutschland: Analytica Verlag, pp. 235-240

