Benedikt Wachinger
PhD Student
Dipl.-Bioinf.
Email me
Phone +49 (0) 89 3187 4100
Building 56
Room 161b
Research Interests
- Text Mining
- Semantic Web Technologies
- Knowledge Management and Integration
- Distributed Systems
Projects
- EXCERBT - Extraction of Classified Entities and Relations from Biomedical Text
Supervised Theses
- Analysis of Semantic Role Annotation of Biomedical Literature for Sensitivity Improvement of Automatically Inferred Systems Biological Models. Barbara Hummel, Master Thesis, 2011
- Analysis of the Systemic Impact of Disease Clusters. Nikolas Gross, Master Thesis, 2011
- Inference of Meta-Information of Biomedical Semantic Role Labeling, Robert Strache, Master Thesis, 2011
Teaching
- Lecture "Bioinformatik für Biowissenschaften I", Winter 2010/2011
Conference Contributions
- B. Wachinger and V. Stümpflen, Scaling Biomedical Topic Maps to Billions of Associations: How to Cope With Terabytes of Data?, Sixth International Conference on Topic Maps Research and Applications, 2010
Publications
- H. W. Mewes, B. Wachinger and V. Stümpflen, Perspectives of a systems biology of the synapse: how to transform an indefinite data space into a model? Pharmacopsychiatry 43 Suppl I, 2010
- V. Stümpflen and B. Wachinger, Datenschätze heben: Systembiologie mit dem Semantic Web, GenomXPress 4.09, 2009
- T. Rattei, P. Tischler, R. Arnold, F. Hamberger, J. Krebs, J. Krumsiek, B. Wachinger, V. Stümpflen and H. W. Mewes, SIMAP - structuring the network of protein similarities. Nucleic Acids Res Vol 36, 2008