biological information systems group (bis)
- Mewes HW, Wachinger B, Stümpflen V.
Perspectives of a Systems Biology of the Synapse: How to Transform an Indefinite Data Space into a Model
Pharmacopsychiatry 43(S1): S2-S8, 2010.
DOI: 10.1055/s-0030-1249666 - Schmidt T, Mewes HW, Stümpflen V.
A novel putative miRNA target enhancer signal
PLoS One 4(7):e6473, 2009.
PMID: 19649282 - Barnickel T, Weston J, Collobert R, Mewes HW, Stümpflen V.
Large scale application of neural network based semantic role labeling for automated relation extraction from biomedical texts
PLoS One 4(7):e6393, 2009.
PMID: 19636432 - Mewes, HW, Dietmann S, Frishman D, Gregory R, Mannhaupt G, Mayer K, Muensterkötter M, Ruepp A, Spannagl M, Stümpflen V, Rattei T.
MIPS: Analysis and annotation of genome information in 2007.
Nuc Acids Res. 36(Database issue):D196-201, 2008.
PMID: 1815829 - Pagel P, Oesterheld M, Tovstukhina O, Strack N, Stümpflen V, Frishman D.
DIMA 2.0 predicted and known domain interactions.
Nucleic Acids Res 36(Database issue):D651-5, 2008.
PMID: 1799999 - Rattei T, Tischler P, Arnold R; Hamberger F, Krebs J, Krumsiek J, Wachinger, B, Stuempflen V, Mewes HW.
SIMAP: structuring the network of protein similarities
Nuc Acids Res 36(Database issue):D289-92, 2008.
PMID: 1803761 - Ruepp A, Brauner B, Dunger-Kaltenbach I, Frishman G, Montrone C, Stransky M, Wägele B, Schmidt T, Noubibou Doudieu O, Stümpflen V, Mewes HW.
CORUM: the Comprehensive Resource of Mammalian Protein Complexes
Nuc Acids Res 36(Database issue):D646-50, 2008.
PMID: 1796509 - Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, Oesterheld M, Stumpflen V, Salwinski L, Nerothin J, Cerami E, Cusick ME, Vidal M, Gilson M, Armstrong J, Woollard P, Hogue C, Eisenberg D, Cesareni G, Apweiler R, Hermjakob H.
Broadening the Horizon - Level 2.5 of the HUPO-PSI Format for Molecular Interactions.
BMC Biol. 5(1):44, 2007.
PMID: 1792502 - Stümpflen V, Barnickel T, Nenova K.
Large Scale Knowledge Representation of Distributed Biomedical Information Scaling Topic Maps
Lecture Notes in Artificial Intelligence 4999: 116-127, TMRA, 2007 - Stümpflen V, Mewes HW.
Neue Informationstechnologien zur Nutzung biologischer Daten.
Biospektrum, 03, 2007, p. 281-28 - Oesterheld M, Mewes HW, Stuempflen V.
Analysis of integrated biomolecular networks using a generic network analysis suite.
J Int Bio. 4(3), 2007. - Pagel P, Strack N, Oesterheld M, Stümpflen V, Frishman D.
Computational prediction of domain interactions.
Methods Mol Biol 396:3-16, 2007.
PMID: 18025682 - Stümpflen, V, Gregory R, Nenova, K.
From Biological Data to Biological Knowledge
Lecture Notes in Artificial Intelligence 4438: 62-66, TMRA, 2006 - Dietmann S, Aguilar D, Mader M, Oesterheld M, Ruepp A, Stuempflen V, Mewes HW.
Resources and Tools for Investigating Biomolecular Networks in Mammals
Curr Pharm Des 12(29):3723-3724, 2006. - Güldener U, Münsterkötter M, Mannhaupt G, Haase D, Oesterheld M, Stumpflen V, Mewes, HW, Adam, G.
FGDB: A comprehensive fungal genome resource on the plant pathogen Fusarium graminearum
Nucl Acids Res 34(Database issue):D456-8, 2006.
PMID: 16381910 - Güldener U, Münsterkötter M, Oesterheld M, Pagel P, Ruepp A, Mewes HW, Stumpflen V.
MPact: the MIPS protein interaction resource on yeast.
Nucl Acids Res 34(Database issue):D436-41, 2006.
PMID: 16381906 - Mewes HW, Frishman D, Mayer K, Münsterkötter M, Noubibou O, Pagel P, Rattei T, Oesterheld M, Ruepp A, Stumpflen V.
MIPS: analysis and annotation of proteins from whole genomes in 2005
Nucl Acids Res 34(suppl_1):D169-D172, 2006.
PMID: 16381839 - Pagel P, Oesterheld M, Stuempflen V, Frishman D.
The DIMA web resource -- exploring the protein domain network
Bioinformatics 22(8):997-8, 2006.
PMID: 16481337 - Rattei T, Arnold R, Tischler P, Lindner D, Stumpflen V, Mewes HW.
SIMAP: the similarity matrix of proteins
Nucl Acids Res 34(Database issue):D252-6, 2006.
PMID: 16381858 - Ruepp A, Doudieu ON, Oever J, Brauner B, Dunger-Kaltenbach I, Fobo G, Frishman G, Montrone C, Skornia C, Wanka S, Rattei T, Pagel P, Riley L, Frishman D, Surmeli D, Tetko I, Oesterheld M, Stümpflen V and Mewes HW.
The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context
Nucl Acids Res 34(Database issue):D568-71, 2006.
PMID: 16381934 - Arnold R, Rattei T, Tischler P, Truong M, Stuempflen V, Mewes, HW.
SIMAP-The similarity matrix of proteins
Bioinformatics 21: ii42-ii46, 2005.
PMID: 16204123 - Pagel P, Kovac S, Oesterheld M, Brauner B, Dunger-Kaltenbach I, Frishman G, Montrone C, Mark P, Stümpflen V, Mewes HW, Ruepp A, Frishman D.
The MIPS mammalian protein-protein interaction database.
Bioinformatics. 21(6):832-4, 2005
PMID: 15531608 - Mewes HW, Amid C, Arnold R, Frishman D, Guldener U, Mannhaupt G, Munsterkotter M, Pagel P, Strack N, Stümpflen V, Warfsmann J and Ruepp A.
MIPS: analysis and annotation of proteins from whole genomes.
Nucleic Acids Res 32 Database issue:D41-4, 2004.
PMID: 14681354 - Karlowski WM, Schoof H, Janakiraman V, Stümpflen V and Mayer KF.
MOsDB: an integrated information resource for rice genomics.
Nucleic Acids Res 31(1):190-2, 2003.
PMID: 12519979 - "On track to provide convenient genome data: The MIPS Comprehensive Yeast Genome Database". Güldener U., Münsterkötter M., Stümpflen V., Kastenmüller G., Mewes HW. YEAST 20: S334-S334 Suppl. 1, JUL 2003
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