institute of bioinformatics and systems biology / mips

Font size »A . A+ . A++ .

2012

  1. Arnold M, Ellwanger DC, Hartsperger ML, Pfeufer A, Stümpflen V.
    Cis-Acting Polymorphisms Affect Complex Traits Through Modifications of MicroRNA Regulation Pathways.
    PLoS ONE, accepted, 2012.
    PMID:22606281
  2. Brandmaier S, Sahlin U, Tetko IV, Oberg T.
    PLS-Optimal: A Stepwise D-Optimal Design Based on Latent Variables.
    J Chem Inf Model. 2012 Apr 11. [Epub ahead of print]
    PMID: 22462577
  3. Chursov A, Walter MC, Schmidt T, Mironov A, Shneider A, Frishman D.
    Sequence-structure relationships in yeast mRNAs.
    Nucleic Acids Res., 40, 956-962., 2012
    PMID: 21954438
  4. Fröhlich A, Gaupels F, Sarioglu H, Holzmeister C, Spannagl M, Durner J, Lindermayr C.
    Looking deep inside: Detection of low-abundant proteins in leave extracts of Arabidopsis thaliana and phloem exudates of Cucurbita maxima.
    Plant Physiol. 2012 May 3. [Epub ahead of print]
    PMID: 22555880
  5. Goek ON, Döring A, Gieger C, Heier M, Koenig W, Prehn C, Römisch-Margl W, Wang-Sattler R, Illig T, Suhre K, Sekula P, Zhai G, Adamski J, Köttgen A, Meisinger C.
    Serum Metabolite Concentrations and Decreased GFR in the General Population.
    Am J Kidney Dis. 2012 Mar 29. [Epub ahead of print]
    PMID: 22464876
  6. Gutch H and Theis F.
    To Infinity and Beyond: On ICA over Hilbert Spaces.
    In Theis F, Cichocki A, Yeredor A and Zibulevsky M, editors, Proc. LVA/ICA 2012, volume 7191 of LNCS, pages 180-187. Springer, Tel Aviv, Israel, 2012. 10.1007/978-3-642-28551-6_23.
  7. Hug S and Theis F.
    Bayesian Inference of Latent Causes in Gene Regulatory Dynamics.
    In Theis F, Cichocki A, Yeredor A and Zibulevsky M, editors, Proc. LVA/ICA 2012, volume 7191 of LNCS, pages 520-527. Springer, Tel Aviv, Israel, 2012. 10.1007/978-3-642-28551-6_64.
  8. Konrad M, Vyleta ML, Theis F J, Stock M, Tragust S, Klatt M, Drescher V, Marr C, Ugelvig LV, and Cremer S.
    Social transfer of pathogenic fungus promotes active immunisation in ant colonies.
    PLoS Biol, 2012, 10(4):e1001300.
  9. Krug S, Kastenmüller G, Stückler F, Rist MJ, Skurk T, Sailer M, Raffler J, Römisch-Margl W, Adamski J, Prehn C, Frank T, Engel KH, Hofmann T, Luy B, Zimmermann R, Moritz F, Schmitt-Kopplin P, Krumsiek J, Kremer W, Huber F, Oeh U, Theis FJ, Szymczak W, Hauner H, Suhre K, Daniel H.
    The dynamic range of the human metabolome revealed by challenges.
    FASEB J., pages fj.11-198093, 2012.
    PMID: 22426117
  10. Leroy P, Guilhot N, Sakai H ,Bernard A, Choulet F, Theil S, Reboux S, Amano N, Flutre T ,Pelegrin C, Ohyanagi H, Seidel M, Giacomoni F, Reichstadt M, Alaux M,Gicquello E, Legeai F, Cerutti L, Numa H, Tanaka T, Mayer K, Itoh T, Quesneville H, Feuillet C.
    TriAnnot: a versatile and high performance pipeline for the automated annotation of plant genomes.
    Frontiers in Plant Science, 3, 2012
  11. Nordhausen K, Gutch H, Oja H and Theis F.
    Joint Diagonalization of Several Scatter Matrices for ICA.
    In Theis F, Cichocki A, Yeredor A and Zibulevsky M, editors, Proc. LVA/ICA 2012, volume 7191 of LNCS, pages 172-179. Springer, Tel Aviv, Israel, 2012. 10.1007/978-3-642-28551-6_22.
  12. Petersen AK, Stark K, Musameh MD, Nelson CP, Römisch-Margl W, Kremer W, Raffler J, Krug S, Skurk T, Rist MJ, Daniel H, Hauner H, Adamski J, Tomaszewski M, Döring A, Peters A, Wichmann HE, Kaess BM, Kalbitzer HR, Huber F, Pfahlert V, Samani NJ, Kronenberg F, Dieplinger H, Illig T, Hengstenberg C, Suhre K, Gieger C, Kastenmüller G.
    Genetic associations with lipoprotein subfractions provide information on their biological nature.
    Hum Mol Genet. 2012 Mar 15;21(6):1433-43. Epub 2011 Dec 8.
    PMID: 22156577
  13. Raue A, Kreutz C, Theis F and Timmer J.
    Joining Forces of Bayesian and Frequentist Methodology: A Study for Inference in the Presence of Non-Identifiability.
    Phil. Trans. Roy. Soc. A, accepted, 2012.
  14. Renner S, Römisch-Margl W, Prehn C, Krebs S, Adamski J, Göke B, Blum H, Suhre K, Roscher AA, Wolf E. Changing
    Metabolic Signatures of Amino Acids and Lipids During the Prediabetic Period in a Pig Model With Impaired Incretin Function and Reduced β-Cell Mass.
    Diabetes. 2012 Apr 9. [Epub ahead of print]
    PMID: 22492530
  15. Römisch-Margl W, Prehn C, Bogumil R, Röhring C,  Suhre K, Adamski J.
    Procedure for tissue sample preparation and metabolite extraction for high-throughput targeted metabolomics
    Metabolomics 2012; 8(1):133-142. DOI: 10.1007/s11306-011-0293-4
  16. Ruepp A, Kowarsch A, Theis F.
    PhenomiR: microRNAs in human diseases and biological processes.
    Methods Mol Biol. 2012;822:249-60.
    PMID: 22144204  [PubMed - indexed for MEDLINE]
  17. Strasser M, Theis FJ, Marr C.
    Stability and multiattractor dynamics of a toggle switch based on a two-stage model of stochastic gene expression.
    Biophysical Journal, Volume 102, Issue 1, 4 January 2012, Pages 19–29.
    PMID:22225794
  18. Studer B, Byrne S, Nielsen RO, Panitz F, Bendixen C, Islam MS, Pfeifer M, Lubberstedt T, Asp T.
    A transcriptome map of perennial ryegrass (Lolium perenne L.)
    BMC Genomics. 2012 Apr 18;13(1):140. [Epub ahead of print]
    PMID: 22513206