institute of bioinformatics and systems biology / mips

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Brigitte Wägele

PhD

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Phone: +49 (0) 89 3187 3640
Building 56
Room 130a

10/2000 - 09/2005: Studies of Bioinformatics at the Ludwig-Maximilians-Universität München (LMU) and the Technische Universität München (TUM)
Diploma-Thesis: „Feature Transformationen für die Funktionsvorhersage auf Proteinen mittels Analyse der 3D Struktur“ (Feature transformations for the prediction of protein function based on 3D structure analysis).
09/2005 – 03/2009: Ph.D. student at Department of Genome-oriented Bioinformatics, Life and Food Science Center Weihenstephan, Technische Universität München
- Degree: Dr. rer. nat.
- Thesis: „Abbildung von Transkript- und Proteinsequenzen auf genomische Referenzdaten“ (Mapping of transcript- and protein sequences on genomic reference data).
Since 03/2009: Member of the metabolomics group at the Institute of Bioinformatics and systems biology, Helmholtz Zentrum München and the Department of Genome-oriented Bioinformatics, Life and Food Science Center Weihenstephan, Technische Universität München funded by the ERA-NET PathoGenoMics project (Pathogen-host metabolomics and interactomics (Pathomics)).

Suhre, K., Shin, S. Y., Petersen, A. K., Mohney, R. P., Meredith, D., Wagele, B., Altmaier, E., Deloukas, P., Erdmann, J., Grundberg, E., Hammond, C. J., de Angelis, M. H., Kastenmuller, G., Kottgen, A., Kronenberg, F., Mangino, M., Meisinger, C., Meitinger, T., Mewes, H. W., Milburn, M. V., Prehn, C., Raffler, J., Ried, J. S., Romisch-Margl, W., Samani, N. J., Small, K. S., Wichmann, H. E., Zhai, G. J., Illig, T., Spector, T. D., Adamski, J., Soranzo, N. and Gieger, C. (2011). Human metabolic individuality in biomedical and pharmaceutical research. Nature 477(7362): 54-U60.
Kastenmuller, G., Romisch-Margl, W., Wagele, B., Altmaier, E. and Suhre, K. (2011). metaP-Server: A Web-Based Metabolomics Data Analysis Tool. Journal of Biomedicine and Biotechnology.

Lucio, M., Fekete, A., Weigert, C., Wagele, B., Zhao, X. J., Chen, J., Fritsche, A., Haring, H. U., Schleicher, E. D., Xu, G. W., Schmitt-Kopplin, P. and Lehmann, R. (2010). Insulin Sensitivity Is Reflected by Characteristic Metabolic Fingerprints - A Fourier Transform Mass Spectrometric Non-Targeted Metabolomics Approach. Plos One 5(10).
Ruepp, A., Waegele, B., Lechner, M., Brauner, B., Dunger-Kaltenbach, I., Fobo, G., Frishman, G., Montrone, C. and Mewes, H. W. (2010). CORUM: the comprehensive resource of mammalian protein complexes-2009. Nucleic Acids Research 38: D497-D501.
Alphonse, S., Durand, E., Douzi, B., Waegele, B., Darbon, H., Filloux, A., Voulhoux, R. and Bernard, C. (2010). Structure of the Pseudomonas aeruginosa XcpT pseudopilin, a major component of the type II secretion system. Journal of Structural Biology 169(1): 75-80.

Waegele, B., Dunger-Kaltenbach, I., Fobo, G., Montrone, C., Mewes, H. W. and Ruepp, A. (2009). CRONOS: the cross-reference navigation server. Bioinformatics 25(1): 141-143.
Waegele, B., Schmidt, T., Mewes, H. W. and Ruepp, A. (2008). OREST: the online resource for EST analysis. Nucleic Acids Research 36: W140-W144.

Ruepp, A., Brauner, B., Dunger-Kaltenbach, I., Frishman, G., Montrone, C., Stransky, M., Waegele, B., Schmidt, T., Doudieu, O. N., Mpflen, V. S. and Mewes, H. W. (2008). CORUM: the comprehensive resource of mammalian protein complexes. Nucleic Acids Research 36: D646-D650.

Datson, N. A., Morsink, M. C., Atanasova, S., Armstrong, V. W., Zischler, H., Schlumbohm, C., Dutilh, B. E., Huynen, M. A., Waegele, B., Ruepp, A., de Kloet, E. R. and Fuchs, E. (2007). Development of the first marmoset-specific DNA microarray (EUMAMA): a new genetic tool for large-scale expression profiling in a non-human primate. Bmc Genomics 8.