Filipczyk AA, Gkatzis K, Fu,J, Hoppe PS, Lickert H, Anastassiadis K and Schroeder T (2013)
Biallelic expression of Nanog protein in mouse embryonic stem cells
Cell Stem Cell, in press

Rieger MA and Schroeder T (2013)
Hematopoiesis
Cold Spring Harb Perspect Biol, 4
and book:  Mammalian Development: Networks, Switches, and Morphogenetic Processes
Cold Spring Harbor Laboratory Press, edited by Nelson, Rossant and Tam

Ortega F, Gascón S, Masserdotti G, Deshpande A, Simon C, Fischer J, Dimou L, Lie DC, Schroeder T and Berninger B (2013)
Oligodendrogliogenic and neurogenic adult subependymal zone neural stem cells constitute distinct lineages and exhibit differential responsiveness to Wnt signaling
Nature Cell Biology, in press

Nakles RE, Millman S, Cabrera MC, Johnson P, Mueller S, Hoppe PS, Schroeder T and Furth PA (2013)
Time-lapse Imaging of Primary Preneoplastic Mammary Epithelial Cells Derived from Genetically Engineered Mouse Models of Breast Cancer
J Vis Exp, 72: e50198

Chambers I and Schroeder T (2012)
Stem Cell Powwow in Squaw Valley
Development, 139: 2457-2461
(PubMed)

Endele M and Schroeder T (2012)
Molecular live cell bioimaging in stem cell research
Hematopoietic Stem Cells VIII
Annals of the New York Academy of Sciences, 1266: 18-27
(PubMed)

Kokkaliaris KD, Loeffler D and Schroeder T (2012)
Advances in Tracking Hematopoiesis at the Single Cell Level
Current Opinion in Hematology, 19: 243-249
(PubMed)

Marr C, Strasser M, Schwarzfischer M, Schroeder T and Theis FJ (2012)
Multi-scale modeling of GMP differentiation based on single-cell genealogies
FEBS Journal, in press
(PubMed)

Schroeder T (2011)
Long-term single-cell imaging of mammalian stem cells
Nature Methods, 8: S30-35
(PubMed)

Loeffler D, Kokkaliaris KD and Schroeder T (2011)
Wnt to Notch relay signaling induces definitive hematopoiesis
Cell Stem Cell, 9: 2-4
(PubMed)

Warlich E, Kühle J, Cantz T, Brugman M, Maetzig T, Galla M, Filipczyk AA, Foerster R, Klump H, Schöler HR, Baum C, Schroeder T* and Schambach A* (2011)
* corresponding author
Lentiviral vector design and imaging approaches to visualize the early stages of cellular reprogramming
Molecular Therapy, 19: 782-789
(PubMed)

Nordon RE, Ko KH, Odell R and Schroeder T (2011)
Multi-type branching models to describe cell differentiation programs
Journal of Theoretical Biology, 277:7-18
(PubMed)

Eilken HM, Rieger MA, Hoppe PS, Hermann AC, Smejkal BM, Drew EC, Thum M, Ninkovic J, Beckervordersandforth RM and Schroeder T (2011)
Continuous long-term detection of live cell surface markers by ‘in culture’ antibody staining
Protocols Exchange, DOI: 10.1038/protex.2011.205
(Protocol Exchange)

Heinrich C, Gascón S, Masserdotti G, Lepier A, Sánchez R, Simon-Ebert T, Schroeder T, Götz M and Berninger B (2011)
Generation of subtype-specific neurons from postnatal astroglia of the mouse cerebral cortex
Nature Protocols, 6: 214-228
(PubMed)

Ortega F, Costa MR, Simon-Ebert T, Schroeder T, Götz M and Berninger B (2011)
Using an adherent cell culture of the mouse subependymal zone to study the behavior of adult neural stem cells on a single-cell level
Nature Protocols, 6: 1847-1859
(PubMed)

Costa M, Ortega F, Brill M, Beckervordersandforth-Bonk R, Petrone C, Schroeder T, Götz M and Berninger B (2011)
Continuous live imaging of adult neural stem cell division and lineage progression in vitro
Development, 138: 1057-1068
(PubMed)

Asami M, Pilz G, Ninkovic J, Godinho L, Schroeder T, Huttner W and Götz M (2011)
The role of Pax6 in regulating the orientation and mode of cell division of progenitors in the mouse cerebral cortex
Development, 138: 5067-5078
(PubMed)

Krumsiek J, Marr C, Schroeder T and Theis FJ (2011)
Hierarchical differentiation of myeloid progenitors is encoded in the regulatory logic of the transcription factor network
PLoS One, 6: e22649
(PubMed)

Tonge PD, Shigeta M, Schroeder T, Andrews PW (2011)
Functionally Defined Substates within the Human Embryonic Stem Cell Compartment
Stem Cell Research, 7:145-153
(PubMed)

Roeder I, Loeffler M, Glauche I, Bornhaeuser M, Buske P, Clarke G, Cross M, Efroni S, Ilan B, Essers M, Galle J, Giangreco A, Glauche I, Griessinger E, Hoppe P, Kobel S, Krinner A, Lauffenburger D, Lemischka I, LoCelso C, Loeffler M, Lutolf M, Moore K, Nazareth E, Oostendorp R, Palmer M, Pompe T, Rocheteau P, Roeder I, Scherf N, Schroeder T, Tajbakhsh S, Vilne B, van der Wath R, Waskow C, Werner C, Yaromina A, Zandstra P (2011)
Towards a quantitative understanding of stem cell–niche interaction: Experiments, models, and technologies
Blood Cells, Molecules, and Diseases, 46: 308-317
(PubMed)

Schwarzfischer M, Marr C, Krumsiek J, Hoppe PS, Schroeder T and Theis FJ (2011)
Efficient fluorescent image normalization for time lapse movies
Proc. Microscopic Image Analysis with Applications in Biology, Heidelberg, Germany, 2. Sept. 2011

Coutu, D.L. & Galipeau, J. (2011)
Roles of FGF signaling in stem cell self-renewal, senescence and aging.
Aging, 3: 920-933
(PubMed)

• Nature Technology Feature on Single Cell Analysis highlighting our approaches:
  Schubert C (2011)
  The deepest differences
  Nature, 480: 133 - 137
• Nature Jobs Feature on Single Cell Imaging highlighting our facility:
  Maxmen A (2011)
  Single-cell analysis: Imaging is everything
  Nature, 480: 139 - 141

Schroeder T (2010)
Hematopoietic stem cell heterogeneity: Subtypes, not unpredictable behavior
Cell Stem Cell, 6: 203-207
(PubMed)

Schroeder T (2010)
The electronic crystal ball: Predicting cell fate from time lapse data
Nature Methods, 7: 190–191
(PubMed)

Ninkovic J, Pinto L, Petricca S, Rieger MA, Schroeder T, Ashery-Padan R,
Favor J and Götz M (2010)
The transcription factor Pax6 regulates survival of dopaminergic
olfactory bulb neurons via crystallin alpha
Neuron, 68: 682-694
(PubMed)

Heinrich C, Blum R, Gascon S, Masserdotti G, Tripathi P, Sánchez R, Tiedt S, Schroeder T, Götz M and Berninger B (2010)
Directing Astroglia from the Cerebral Cortex into Subtype Specific Functional Neurons
PLoS Biology, 8: e1000373
(PubMed)

• Stocking C, Grez M, Fehse B, von Laer D, Itoh K, Prassolov V, Nowock J, Kühlcke K, Just U, Schroeder T, Klump H, Schiedlmeier B, Grassman E, Meyer J, Li Z, Schambach A, Modlich U, Kustikova O, Galla M, Bode J, Zander A, Baum C. (2010)
  Cell and virus genetics at the roots of gene therapy, retrovirology, and hematopoietic stem cell biology: Wolfram Ostertag
  Human Gene Therapy, 21: 1501-1503.
  (PubMed)
  
  
• Nature Technology Feature on 'Cellular Imaging', highlighting our novel bioimaging approaches: Baker M (2010)
  Cellular imaging: Taking a long, hard look
  Nature, 466: 1137 - 1140
  (PubMed)

Rieger MA, Hoppe PS, Smejkal BM, Eitelhuber AC and Schroeder T (2009)
Hematopoietic cytokines can instruct lineage choice
Science, 325: 217-218
(PubMed)

• (P)Reviews in scientific journals:
    Science Signaling
    Nature Reports Stem Cells
    Nature Reviews Immunology
    Cell Stem Cell
    Nature
    recommended by the Faculty of 1000 Biology

Eilken HM, Nishikawa SI and Schroeder T (2009)
Continuous single-cell imaging of blood generation from haemogenic endothelium
Nature, 457: 896 - 900
(PubMed) 

• (P)Reviews in scientific journals:
    Nature
    Cell Stem Cell 
    Nature Reports Stem Cells
    Nature Reviews Molecular Cell Biology 
    Nature

Kimura A*, Rieger MA*, Simone JM, Chen W, Wickre MC, Zhu BM, Hoppe PS, O’Shea J, Schroeder T** and Hennighausen L** (2009)
* and ** equal contributions
The transcription factors STAT5A/B regulate GM-CSF-mediated granulopoiesis
Blood, 114: 4721 - 4728
(PubMed) 

Rieger MA and Schroeder T (2009)
Analysing cell fate control by cytokines through continuous single cell biochemistry
Journal of Cellular Biochemistry, 108: 343 - 352
(PubMed) 

Rieger MA, Smejkal BM and Schroeder T (2009)
Improved prospective identification of megakaryocyte-erythrocyte progenitor cells
British Journal of Haematology, 144: 448 - 451
(PubMed)

Rieger MA and Schroeder T (2009)
Instruction of lineage choice by hematopoietic cytokines
Cell Cycle, 8: 4019 - 4020
(PubMed)

Costa M, Bucholz O, Schroeder T and Götz M (2009)
Late origin of glia-restricted progenitors in the developing mouse cerebral cortex
Cerebral Cortex, 19 Suppl 1: i135 - 143
(PubMed)

Schroeder  T (2008)
Imaging stem cell driven mammalian regeneration
Nature, 453: 345 - 351
(PubMed)

• Interview (Q&A) of Nature editor Monya Baker with Timm Schroeder about stem cell tracking: More...

Rieger MA and Schroeder (2008)
Exploring hematopoiesis at single cell resolution
Cells Tissues Organs, 188: 139-149
(PubMed)

Henning K*, Heering J*, Schwanbeck R*, Schroeder T*, Helmbold H, Schäfer H, Deppert W, Kim E and Just U (2008)
* equal contribution
Notch1 activation reduces proliferation in multipotent hematopoietic progenitor cell line FDCP-mix through a p53-dependent pathway but Notch1 effects on myeloid and erythroid differentiation are independent of p53
Cell Death and Differentiation 15: 398-407
(PubMed)

Drew EC and Schroeder T (2008)
The Big Brother of Blood: The need for constant video surveillance of individual cells
New Cell Differentiation Research Topics, edited by H Saitama
Nova Science Publishers, 229 - 246

Costa M, Wen G, Lepier A, Schroeder T and Götz M (2008)
Par complex proteins promote proliferating progenitor divisions in the developing mouse cerebral cortex
Development 135:11-22
(PubMed)

Schwanbeck R, Schroeder T, Henning K, Kohlhof H, Rieber N, Erfurth ML and Just U (2008) Notch signalling in embryonic and adult hematopoiesis
Cells Tissues Organs, 188:  91-102
(PubMed)

Rastelli J, Hömig C, Seagal J, Müller W, Hermann A, Rajewsky K and Zimber-Strobl U (2008)
LMP1 signaling can replace CD40 signaling in B cells in vivo and has unique features of inducing class-switsh recombination to IgG1
Blood, 111: 1448-1455
(PubMed)

Klier M, Anastasov N, Hermann A, Meindl T, Angermeier D, Raffeld M, Fend F, and Quintanilla-Martinez L (2008)
Specific lentiviral shRNA-mediated knockdown of cyclin D1 in mantle cell lymphoma has minimal effects on cell survival and reveals a regulatory circuit with cyclin D2
Leukemia
(PubMed)

Arakawa H, Kudo H, Batrak V, Caldwell RB, Rieger MA, Ellwart JW and Buerstedde JM (2008)
Protein evolution by hypermutation and selection in the B cell line DT40
Nucleic Acids Research,  2007 Dec 11, Epub ahead of print
(PubMed) (Full text - pdf)

Schroeder T (2007)
Asymmetric cell division in normal and malignant hematopoietic precursor cells
Cell Stem Cell, 1: 479-481
(PubMed)

Henning K*, Schroeder T*, Schwanbeck R, Rieber N, Bresnick E and Just U (2007)
* equal contribution
mNotch1 signaling and erythropoietin cooperate in erythroid differentiation of multipotent progenitor cells and upregulate β-globin
Experimental Hematology, 35: 1321 - 1332
(PubMed)

Rieger MA and Schroeder T (2007)
Hämatopoetische Stammzellen
Review (German)
Biospektrum, 3.2007: 254-256

Berninger B, Costa M, Schroeder T, Koch U, Sutor B, Grothe B and Götz M (2007)
Functional properties of neurons derived from in-vitro reprogrammed postnatal astroglia
The Journal of Neuroscience, 27: 8654 - 8664
(PubMed)

Fürst R, Schroeder T, Eilken HM, Bubik M, Kiemer A, Zahler S and Vollmar A (2007)
MKP-1 represents a novel anti-inflammatory target of glucocorticoids in the human endothelium
FASEB Journal 21, 74-80
(PubMed) (Full text - pdf)

Schroeder T*, Meier-Stiegen F, Schwanbeck R, Eilken H, Nishikawa S, Häsler R, Schreiber S, Bornkamm GW, Nishikawa SI and Just U* (2006)
* corresponding author
Activated Notch1 alters differentiation of embryonic stem cells into mesodermal cell lineages at multiple stages of development
Mechanisms of Development, 123, 570-579
(PubMed)

Cappello S, Attardo A, Wu X, Iwasato T, Itohara S, Wilsch-Brauninger M, Eilken HM, Rieger MA, Schroeder T, HuttnerWB, Brakebusch C and Götz M (2006)
The Rho-GTPase cdc42 regulates cortical progenitor fate at the apical surface
Nature Neuroscience, 9, 1099-1107
(PubMed) (Full text - pdf)

Yurugi –Kobayashi Y, Itoh H, Schroeder T, Nakano A, Narazaki G, Kita F, Yanagi K, Hiraoka-Kanie M, Inoue E, Ara T, Nagasawa T, Just U, Nakao K, Nishikawa SI, and Yamashita J (2006)
Adrenomedullin/cyclic AMP pathway induces Notch activation and differentiation of arterial endothelial cells from vascular progenitors
Arteriosclerosis, Thrombosis, and Vascular Biology, 26, 1977-1984
(PubMed)

Wolff H, Hartl A, Eilken HM, Hadian K, Ziegler M and Brack-Werner R (2006)
A live-cell assay for simultaneous monitoring of expression and interaction of proteins
Biotechniques, 41, 688-692
(PubMed)

Schroeder T. (2005)
Tracking Hematopoiesis at the Single Cell Level.
Hematopoietic Stem Cells V,
Annals of the New York Academy of Sciences, 1044, 201-209
(PubMed)

Czuchra A., Wu X., Meyer H., van Hengel J., Schroeder T., Rottner K. and Brakebusch C. (2005)
Cdc42 is not essential for filopodium formation, directed migration, cell polarization and mitosis in fibroblastoid cells.
Molecular Biology of the Cell, 16, 4473-4484
(PubMed) (Full text - pdf)

Mayer R., Brero A., von Hase J., Schroeder T., Cremer T. and Dietzel S. (2005)
Common Themes and Cell Type Specific Variations of Higher Order Chromatin Arrangements in the Mouse.
BMC Cell Biol, 2005 Dec 7;6:44
(PubMed) (Full text - pdf)

Okita C., Sato M. and Schroeder T. (2004)
New subcellular forms of optimized yellow and red fluorescent proteins.
Biotechniques, 36, 418-423
(PubMed)

Schroeder T. , Fraser S., Ogawa M., Nishikawa S., Oka C., Bornkamm GW., Nishikawa SI., Honjo T. and Just U. (2003)
Recombination signal sequence-binding protein Jk alters mesodermal cell fate decisions by suppressing cardiomyogenesis.
PNAS, 100, 4018-4023
(PubMed) (Full text - pdf)

Schroeder T. , Kohlhof H., Rieber N., and Just U. (2003)
Notch signaling induces multilineage myeloid differentiation and up-regulates PU.1 expression.
The Journal of Immunology, 170, 5538-5548
(PubMed) (Full text - pdf)

McIvor Z., Hein S., Fiegler H., Schroeder T., Stocking C., Just U. and Cross M. (2003)
The transient expression of Pu.1 commits multipotent progenitors to a myeloid fate, while continued expression favours macrophage over granulocyte differentiation.
Experimental Hematology, 31, 39-47
(PubMed)

Mathys S., Schroeder T., Ellwart J., Koszinowski U. , Messerle M. and Just U. (2003)
Dendritic cells under influence of mouse cytomegalovirus have a physiologic dual role: to initiate and to restrict T cell activation.
The Journal of Infectious Diseases, 187, 988-999
(PubMed) (Full text - pdf)

Schroeder, T. and Just, U. (2000)
Notch signalling via RBP-J promotes myeloid differentiation.
EMBO Journal, 19, 2558-2568
(PubMed) (Full text - pdf)

Schroeder, T. and Just, U. (2000)
mNotch1 signaling reduces proliferation of myeloid progenitor cells by altering cell-cycle kinetics.
Experimental Hematology, 28, 1206-1213
(PubMed)

Schroeder, T. , Lange, C., Strehl, J. and Just, U. (2000)
Generation of functionally mature dendritic cells from the multipotential stem cell line FDCP-mix.
British Journal of Haematology, 111, 890-897
(PubMed)

Drzeniek, Z., Stocker, G., Siebertz, B., Just, U., Schroeder, T., Ostertag, W. and Haubeck, H.D. (1999)
Heparan sulfate proteoglycan expression is induced during early erythroid differentiation of multipotent hematopoietic stem cells.
Blood, 93, 2884-2897
(PubMed) (Full text - pdf)