Publications
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Key publications are highlighted.
* = joint first authors, # = joint last authors
Publications in press
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Metabolomic profiles in individuals with negative affect and social inhibition: findings from the F4 KORA population.
Altmaier E, Emeny RT, Krumsiek J, Lacruz ME, Lukaschek K, Häfner S, Kastenmüller G, Römisch-Margl W, Prehn C, Mohney RP, Evans AM, Milburn MV, Illig T, Adamski J, Theis FJ, Suhre K, Ladwig K
Psychoneuroendocrinology, accepted
2013
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We use MCMC-sampling in 113 dimensions to fit an ODE-based signaling model to data.
High-Dimensional Bayesian Parameter Estimation: Case Study for a Model of JAK2/STAT5 Signaling.
Hug S*, Raue A*, Hasenauer J, Bachmann J, Klingmüller U, Timmer J, Theis FJ
Mathematical Biosciences, 2013
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Within 18 transcription factor quantified in 600 hematopoietic cells, we identified clusters related to differentiation state using dimension reduction methods.
Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis.
Moignard V, Macaulay IC, Swiers G, Buettner F, Schütte J, Calero-Nieto FJ, Kinston S, Joshi A, Hannah R, Theis FJ, Jacobsen SE, Bruijn MFd, Göttgens B
Nature Cell Biology, 15(4):363-72, 2013 [ PubMed ]
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Visualizing Edge-Edge Relations in Graphs.
Vehlow C, Hasenauer J, Theis FJ, Weiskopf D
in Proc. PacificVis 2013, 2013 [ PDF ]
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We contributed an asthma-associated metabolomics-derived Gaussian graphical model.
Integrative genetic and metabolite profiling analysis suggests altered phosphatidylcholine metabolism in asthma.
Ried JS, Baurecht H, Stückler F, Krumsiek J, Gieger C, Heinrich J, Kabesch M, Prehn C, Peters A, Rodriguez E, Schulz H, Strauch K, Suhre K, Wang-Sattler R, Wichmann E, Theis FJ, Illig T, Adamski J, Weidinger &S
Allergy, 2013 [ PDF ]
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Effects of smoking and smoking cessation on human serum metabolite profile: results from the KORA cohort study.
Xu T, Holzapfel C, Dong X, Bader E, Yu Z, Eitlhuber K, Jaremek M, Prehn C, Roemisch-Margl W, Rathmann W, Li Y, Wichmann H-, Wallaschofski H, Ladwig KH, Theis FJ, Suhre K, Adamski J, Illig T, Peters A, Wang-Sattler R
BMC Medicine, 11:60, 2013 [ PDF ]
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Cool microscopy technique. We contributed image registration and analysis.
Live imaging of astrocyte responses to acute injury reveals selective juxtavascular proliferation.
Bardehle S, Krüger M, Buggenthin F, Schwausch J, Ninkovic J, Clevers H, Snippert HJ, Theis FJ, Meyer-Luehmann M, Bechmann I, Dimou L, Götz M
Nature Neuroscience, 2013 [ PubMed ]
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Rejoinder of a discussion series on our vine-copula sampler, see journal site.
Rejoinder (on a vine-copula based adaptive MCMC sampler for efficient inference of dynamical systems).
Schmidl D, Czado C, Hug S, Theis FJ
Bayesian Analysis, 8(1):33-42, 2013 [ PDF ]
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We combine profile-likelihood analyses with MCMC sampling for parameter inference in ODEs.
Joining Forces of Bayesian and Frequentist Methodology: A Study for Inference in the Presence of Non-Identifiability.
Raue A, Kreutz C, Theis FJ, Timmer J
Phil. Trans. Roy. Soc. A, 2013 [ PDF ]
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A study of random Boolean networks extending concepts introduced here.
Truth-content and phase transitions of random Boolean networks with generic logics.
Wittmann D, Hock S, Theis FJ
SIAM Journal on Applied Dynamical Systems, 12(1):315-351, 2013
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Systematic Complexity Reduction of Signaling Models and Application to a CD95 Signaling Model for Apoptosis.
Rickert D, Fricker N, Lavrik IN, Theis FJ
in Systems Biology of Apoptosis, 2013 [ PDF ]
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An efficient MCMC parameter estimation method using higher-order parameter dependencies, applied e.g. here
A vine-copula based adaptive MCMC sampler for efficient inference of dynamical systems.
Schmidl D, Czado C, Hug S, Theis FJ
Bayesian Analysis, 8(1):1-22, 2013 [ PDF ]
2012
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In the context of a gout-focused GWAS, we contributed genetics-PPI integration.
Genome-wide Association Analyses Identify 18 New Loci Associated With Serum Urate.
Köttgen A*, Albrecht E*, Teumer A*, Vitart V*, Krumsiek J*, ] [, Theis FJ, ] [, Ciullo M#, Fox C#, Caulfield M#, Bochud M#, Gieger C#
Nature Genetics, 2012 [ PubMed ]
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Proof that separation into indepedent irreducible subspaces is unique - see algorithm
Uniqueness of linear factorizations into independent subspaces.
Gutch H, Theis FJ
Journal of Multivariate Analysis, 2012 [ PDF ]
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We use a combination of graphical modeling and genetics to identify previously unknown metabolites.
Mining the unknown: A systems approach to metabolite identification combining genetic and metabolic information.
Krumsiek J, Suhre K, Evans AM, Mitchell MW, Mohney RP, Milburn MV, Wägele B, Römisch-Margl W, Illig T, Adamski J, Gieger C, Theis FJ, Kastenmüller G
PLoS Genetics, 8(10):e1003005, 2012 [ PDF ]
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Specific Temperature-induced Perturbations of Secondary mRNA Structures are Associated with the Cold-adapted Temperature-sensitive Phenotype of Influenza A Virus.
Chursov A, Kopetzky SJ, Leshchiner I, Kondofersky I, Theis FJ, Frishman D, Shneider A
RNA Biology, 9(10):1266-1274, 2012 [ PDF | PubMed ]
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Nonlinear dimension reduction on single-cell data finds novel subgroup structure.
A novel approach for resolving differences in single-cell gene expression patterns from zygote to blastocyst.
Buettner F, Theis FJ
Bioinformatics, 28(18):i626-i632, 2012 [ PDF | PubMed ]
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A unilateral negative feedback loop between miR-200 microRNAs and Sox2/E2F3 controls neural progenitor cell cycle exit and differentiation.
Peng C, Li N, Ng Y-, Zhang J, Meier F, Theis FJ, Merkenschlager M, Chen W, Wurst W, Prakash N
Journal of Neuroscience, 32(38):13292-13308, 2012 [ PDF | PubMed ]
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Model selection based on thermodynamic integration and efficient MCMC sampling
Bayesian model selection validates a biokinetic model for zirconium processing in humans.
Schmidl D*, Hug S*, Li WB, Greiter MB, Theis FJ
BMC Systems Biology, 6:95, 2012 [ PDF ]
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Can combined allele frequency of multiple susceptibility genes stratify type 1 diabetes risk? Yes, it can; cf. Spiegel online article.
A strategy for combining minor genetic susceptibility genes to improve prediction of disease in type 1 diabetes.
Winkler C, Krumsiek J, Lempainen J, Achenbach P, Grallert H, Giannopoulou E, Bunka M, Theis FJ, Bonifacio E, Ziegler A
Genes & Immunity, 2012 [ PDF ]
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Identification and quantification of 1-hydroxybutene-2-yl mercapturic acid in human urine by UPLC- HILIC-MS/MS as a novel biomarker for 1,3-butadiene exposure.
Sterz K, Scherer G, Krumsiek J, Theis FJ, Ecker J
Chem. Res. Toxicol., 25(8):1565-1567, 2012 [ PDF | PubMed ]
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We developed a fatty acid beta-oxidation model to analyze the interplay between metabolite profiles and individual phenotypes.
The dynamic range of the human metabolome revealed by challenges.
Krug S*, Kastenmüller G*, Stückler F*, Rist MJ*, Skurk T*, Sailer M, Raffler J, Römisch-Margl W, Adamski J, Prehn C, Frank T, Engel K, Hofmann T, Luy B, Zimmermann R, Moritz F, Schmitt-Kopplin P, Krumsiek J, Kremer W, Huber F, Oeh U, Theis FJ, Szymczak W, Hauner H, Suhre K, Daniel H
FASEB J., 2012 [ PDF | PubMed ]
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Differential network analysis using metabolomics-based Gaussian graphical models
Body Fat Free Mass is associated with the Serum Metabolite Profile in a Population-Based Study.
Jourdan C, Petersen A, Gieger C, Döring A, Illig T, Wang-Sattler R, Meisinger C, Peters A, Adamski J, Prehn C, Suhre K, Altmaier E, Kastenmüller G, Römisch-Margl W, Theis FJ, Krumsiek J, Wichmann H, Linseisen J
PLoS One, 7(6):e40009, 2012 [ PDF | PubMed ]
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We use a branching process model to infer GMP differentiation probabilities from colony assays.
Multi-scale modeling of GMP differentiation based on single-cell genealogies.
Marr C*, Strasser M*, Schwarzfischer M, Schroeder T, Theis FJ
FEBS Journal, 2012 [ PDF | PubMed ]
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Bayesian Independent Component Analysis recovers pathway signatures from blood metabolomics data.
Krumsiek J, Suhre K, Illig T, Adamski J, Theis FJ
Journal of Proteome Research, 11(8):4120-4131, 2012 [ PDF | PubMed ]
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On the hypothesis-free testing of metabolite ratios in genome-wide and metabolome-wide association studies.
Petersen A, Krumsiek J, Wägele B, Theis FJ, Wichmann H, Gieger C, Suhre K
BMC Bioinformatics, 13:120, 2012 [ PubMed ]
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Covered by the New York Times,
Süddeutsche Zeitung, Spiegel Online and more.
Social Transfer of Pathogenic Fungus Promotes Active Immunisation in Ant Colonies.
Konrad M, Vyleta ML, Theis FJ, Stock M, Tragust S, Klatt M, Drescher V, Marr C, Ugelvig LV, Cremer S
PLoS Biology, 10(4):e1001300, 2012 [ PDF | PubMed ]
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Measuring Non-Gaussianity by Phi-transformed and Fuzzy Histograms.
Plant C, Thai SM, Shao J, Theis FJ, Meyer-Baese A, Böhm C
Advances in Artificial Neural Systems, 2012:962105, 2012 [ PDF ]
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Joint Diagonalization of Several Scatter Matrices for ICA.
Nordhausen K, Gutch HW, Oja H, Theis FJ
in Proc. LVA/ICA 2012, 2012 [ PDF ]
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Bayesian Inference of Latent Causes in Gene Regulatory Dynamics.
Hug S, Theis FJ
in Proc. LVA/ICA 2012, 2012 [ PDF ]
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Bayesian version of this algorithm
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To Infinity and Beyond: On ICA over Hilbert Spaces.
Gutch HW, Theis FJ
in Proc. LVA/ICA 2012, 2012 [ PDF ]
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We identify two non-differentiated but primed states in the stochastic 2-stage toggle switch.
Stability and multi-attractor dynamics of a gene switch based on a two-stage model of gene expression.
Strasser M, Theis FJ, Marr C
Biophysical Journal, 2012 [ PDF | PubMed ]
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Bayesian version of the GraDe algorithm
Blind source separation using latent gaussian graphical models.
Illner K, Fuchs C, Theis FJ
in Proc. WCSB 2012, 2012 [ PDF ]
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Nice review of some of our metabolomics activity.
Systems Biology meets Metabolism.
Krumsiek J, Stückler F, Kastenmüller G, Theis FJ
in Genetics Meets Metabolomics, 2012 [ PDF ]
2011
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The nature and perception of fluctuations in human musical rhythms.
Hennig H, Fleischmann R, Fredebohm A, Hagmayer Y, Nagler J, Witt A, Theis FJ, Geisel T
PLoS ONE, 6(10):e26457, 2011 [ PDF | PubMed ]
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We use a robust Bayesian principal component analysis algorithm that explicitely allows for missing values.
Complex principal component and correlation structure of 16 yeast genomic variables.
Theis FJ, Latif N, Wong P, Frishman D
Molecular Biology and Evolution, 28(9):2501-2512, 2011 [ PDF | PubMed ]
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Another differential network based on metabolomics-derived Gaussian graphical models
Discovery of sexual dimorphisms in metabolic and genetic biomarkers.
Mittelstrass K*, Ried JS*, Yu Z*, Krumsiek J, Gieger C, Prehn C, Roemisch-Margl W, Polonikov A, Peters A, Theis FJ, Meitinger T, Kronenberg F, Weidinger S, Wichmann H-, Suhre K, Wang-Sattler R, Adamski J#, Illig T#
PLoS Genetics, 7(8):e1002215, 2011 [ PDF | PubMed ]
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The known hierarchical state space in hematopoiesis is generated by a literature regulatory model.
Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network.
Krumsiek J*, Marr C*, Schroeder T, Theis FJ
PLoS ONE, 6(8):e22649, 2011 [ PDF | PubMed ]
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Co-expressed miRNAs frequently target components of complexes - with experimental confirmation.
MicroRNAs coordinately regulate protein complexes.
Sass S*, Dietmann S*, Burk U, Brabletz S, Lutter D, Kowarsch A, Mayer K, Brabletz T, Ruepp A, Theis* FJ, Wang* Y
BMC Systems Biology, 5:136, 2011 [ PDF | PubMed ]
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The Sox17-mCherry Fusion Mouse Line Allows Visualization of Endoderm and Vascular Endothelial Development.
Burtscher I, Barkey W, Schwarzfischer M, Theis FJ, Lickert H
genesis, The Journal of Genetics and Development, 2011 [ PDF | PubMed ]
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We prove some properties of signaling models, independent of actual parameters.
Theoretical analysis of time-to-peak responses in biological reaction networks.
Theis FJ*, Bohl S*, Klingmüller U
Bulletin of Mathematical Biology, 73(5):978-1003, 2011 [ PDF | PubMed ]
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MicroRNA target enrichment with an online tool
miTALOS: analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs.
Kowarsch A, Preusse M, Marr C, Theis FJ
RNA, 17:809-819, 2011 [ PDF | PubMed ]
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Dynamic Mathematical Modeling of IL13-induced Signaling in Hodgkin and Primary Mediastinal B-cell Lymphoma Allows Prediction of Therapeutic Targets.
Raia V, Schilling M, Böhm M, Hahn B, Kowarsch A, Raue A, Sticht C, Bohl S, Saile M, Möller P, Gretz N, Timmer J, Theis FJ, Lehmann W-, Lichter P, Klingmüller U
Cancer Research, 71:693-704, 2011 [ PDF | PubMed ]
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Huge Splicing Frequency in Human Y Chromosomal UTY Gene.
Laaser I, Theis FJ, Angelis MHd, Kolb H, Adamski J
OMICS A journal of Integrative Biology, 15(3):141-154, 2011 [ PDF | PubMed ]
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Pathway reconstruction using Graphical Models, see here!
Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data.
Krumsiek J, Suhre K, Illig T, Adamski J, Theis FJ
BMC Systems Biology, 5:21, 2011 [ PDF | PubMed ]
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Effective parameters determining the information flow in hierarchical biological systems.
Blöchl F*, Wittmann DM*, Theis FJ
Bulletin of Mathematical Biology, 73(4):706-725, 2011 [ PDF | PubMed ]
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Exploratory Matrix Factorization Techniques for Large Scale Biomedical Data Sets.
Lang EW, Schachtner R, Lutter D, Herold D, Knollmüller P, Theis FJ, Schmitz G, Tomé AM, Gomez-Vilda P, Puntonet CG, Saéz JMG, Stetter M
in Recent Advances in Biomedical Signal Processing, 2011 [ PDF ]
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Are we to integrate previous information into microarray analyses? Interpretation of a Lmx1b-knockout experiment.
Blöchl F, Rascle A, Kastner J, Witzgall R, Lang EW, Theis FJ
in Recent Advances in Biomedical Signal Processing, 2011 [ PDF ]
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The Heckscher-Ohlin Model and the Network Structure of International Trade.
Baskaran T, Blöchl F, Brück T, Theis FJ
International Review of Economics and Finance, 20(2):135-145, 2011 [ PDF ]
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Dynamic regimes of random fuzzy logic networks.
Wittmann DM, Theis FJ
New Journal of Physics, 13:013041, 2011 [ PDF ]
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Vertex centralities in input-output networks reveal the structure of modern economies.
Blöchl F, Theis FJ, Vega-Redondo F, Fisher E
Physical Review E, 83:046127, 2011 [ PDF ]
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Steady state robustness of qualitative gene regulation networks.
Breindl C, Waldherr S, Wittmann D, Theis FJ, Allgower F
International Journal of Robust and Nonlinear Control, 21(15):1742-1758, 2011 [ PDF ]
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Uniqueness proof of an independence based dimension reduction scheme based on the one-dimensional proof
Uniqueness of non-Gaussianity-based dimension reduction.
Theis FJ, Kawanabe M, Müller KR
IEEE Transactions on Signal Processing, 59(9):4478-4482, 2011 [ PDF ]
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An independent subspace analysis algorithm with unknown group sizes successfully identifies biologically meaningful clusters in metabolomics data.
Gutch H, Krumsiek J, Theis FJ
in Proc. EUSIPCO 2011, 2011 [ PDF ]
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An ensemble approach for inferring semi-quantitative regulatory dynamics for the differentiation of mouse embryonic stem cells using prior knowledge.
Lutter D*, Bruns P*, Theis FJ
in Advances in Systems Biology, 2011 [ PDF ]
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Gaussian Graphical Modeling Reveals Specific Lipid Correlations in Glioblastoma Cellsc Lipid Correlations in Glioblastoma Cells.
Müller NS, Krumsiek J, Theis FJ, Böhm C, Meyer-Baese A
in Proc. SPIE 2011, 2011 [ PDF ]
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Modularity maximization and tree clustering: Novel ways to determine effective geographic borders.
Grady D, Brune R, Thiemann C, Theis FJ, Brockmann D
in Handbook of Optimization in Complex Networks, 2011 [ PDF ]
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Efficient fluorescence image normalization for time lapse movies.
Schwarzfischer M*, Marr C*, Krumsiek J, Hoppe PS, Schroeder T, Theis FJ
in Proc. Microscopic Image Analysis with Applications in Biology, 2011 [ PDF ]
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Review on using odefy
From Discrete to Continuous Gene Regulation Models -- A Tutorial Using the Odefy Toolbox.
Krumsiek J, Wittmann D, Theis FJ
in Applications of MATLAB in Science and Engineering, 2011 [ PDF ]
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The Signal Separation Evaluation Campaign (2007-2010): Achievements and Remaining Challenges.
Vincent E, Araki S, Theis FJ, Nolte G, Bofill P, Sawada H, Ozerov A, Gowreesunker V, Lutter D, Duong NQK
Signal Processing, 2011 [ PDF ]
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ICA over finite fields---Separability and algorithms.
Gutch H, Yeredor A, Theis FJ
Signal Processing, 2011 [ PDF ]
2010
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From Binary to Multivalued to Continuous Models: The lac Operon as a Case Study.
Franke R, Theis FJ, Klamt S
Journal of Integrative Bioinformatics, 7:1, 2010 [ PDF | PubMed ]
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MicroRNA loss enhances learning and memory in mice.
Konopka W*, Kiryk A*, Novak M*, Herwerth M, Parkitna JR, Wawrzyniak M, Kowarsch A, Michaluk P, Arnsperger T, Wilczynski GM, Merkenschlager M, Theis FJ, Köhr G, Kaczmarek L, Schütz G
Journal of Neuroscience, 30(44):14835-14842, 2010 [ PDF | PubMed ]
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Ensemble clustering of geographic transport networks - nice collaboration with the Brockmann group
The structure of borders in a small world.
Thiemann C, Theis FJ, Grady D, Brune R, Brockmann D
PLoS ONE, 5(11):e15422, 2010 [ PDF | PubMed ]
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GraDe: separating multiple expression patterns using a network prior - here a gene regulatory network from literature.
Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation.
Kowarsch A*, Blöchl F*, Bohl S, Saile M, Gretz N, Klingmüller U, Theis FJ
BMC Bioinformatics, 11:585, 2010 [ PDF | PubMed ]
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Biologically meaningful update rules increase the critical connectivity of generalized Kauffman networks.
Wittmann DM, Marr C, Theis FJ
Journal of Theoretical Biology, 2010 [ PDF | PubMed ]
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Network clustering using an NMF-type algorithm - software available
Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs.
Hartsperger ML*, Blöchl F*, Stümpflen V, Theis FJ
BMC Bioinformatics, 11:522, 2010 [ PDF | PubMed ]
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Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli.
Marr C, Theis FJ, Liebovitch L, Hütt M
PLoS Computational Biology, 6(7):e1000836, 2010 [ PDF | PubMed ]
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Using our PhenomiR resource to link and analyse microRNAs with diseases and pathways.
Tissue-specific target analysis of disease-associated microRNAs in human signaling pathways.
Kowarsch A*, Marr C*, Schmidl D, Ruepp A, Theis FJ
PLoS ONE, 5(6):e11154, 2010 [ PDF | PubMed ]
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The a-d coefficient as a descriptive measure of the within-group agreement of ratings.
Kreuzpointner L, Simon P, Theis FJ
British Journal of Mathematical and Statistical Psychology, 2010 [ PDF | PubMed ]
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Generating ODEs out of interation graphs or Boolean models - software here
Odefy - From discrete to continuous models.
Krumsiek J, Poelsterl S, Wittmann DM, Theis FJ
BMC Bioinformatics, 11:233, 2010 [ PDF | PubMed ]
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Comparison of microRNA host and targets, also see miTALOS.
Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects.
Lutter D, Marr C, Krumsiek J, Lang EW, Theis FJ
BMC Genomics, 11:224, 2010 [ PDF | PubMed ]
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An online resource of functionally annotated microRNA expression profiles.
PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes.
Ruepp A, Kowarsch A, Schmidl D, Buggenthin F, Brauner B, Dunger I, Fobo G, Frishman G, Montrone C, Theis FJ
Genome Biology, 11(1):R6, 2010 [ PDF | PubMed ]
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MIPS: curated databases and comprehensive secondary data resources in 2010.
Mewes HW, Ruepp A, Theis FJ, Rattei T, Walter M, Frishman D, Suhre K, Spannagl M, Mayer KF, Stümpflen V, Antonov A
Nucleic Acids Res, 2010 [ PDF | PubMed ]
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Robust Stability Analysis and Design Under Consideration of Multiple Feedback Loops of the Tryptophan Regulatory Network of Escherichia coli.
Meyer-Baese A, Theis FJ, Emmett MR
in Advances in Computational Biology, 2010 [ PDF | PubMed ]
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Gene Regulation at the Mid-Hindbrain Boundary: Study of a Mathematical Model in the Stationary Limit.
Ansorg M, Blöchl F, Castell Wz, Theis FJ, Wittmann DM
International Journal of Biomathematics and Biostatistics, 2010 [ PDF ]
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Dimension reduction using a process's autocovariance structure - get software here
Colored subspace analysis: dimension reduction based on a signal's autocorrelation structure.
Theis FJ
IEEE Transactions on Circuits and Systems I, 57(7):1-12, 2010 [ PDF ]
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Robust Stability Analysis of Multi-Time Scale Genetic Regulatory Networks under Parametric Uncertainties.
Meyer-Baese A, Plant C, Cappendijk S, Theis FJ
in Proc. WORLDCOMP 2010, 2010 [ PDF ]
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Robust Stability Analysis and Design Under Consideration of Multiple Feedback Loops in the Tryptophan Regulatory Network of E. coli.
Meyer-Baese A, Theis FJ
in Proc. WORLDCOMP 2010, 2010 [ PDF ]
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Information-theoretic Model Selection for Independent Components.
Plant C, Theis FJ, Meyer-Baese A, Böhm C
in Proc. ICA 2010, 2010 [ PDF ]
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Robust second-order source separation identifies experimental responses in biomedical imaging.
Theis FJ, Müller NS, Plant C, Böhm C
in Proc. ICA 2010, 2010 [ PDF ]
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Theory paper for the GraDe algorithm
Second-order source separation based on prior knowledge realized in a graph model.
Blöchl F*, Kowarsch A*, Theis FJ
in Proc. ICA 2010, 2010 [ PDF ]
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Second Order Subspace Analysis and Simple Decompositions.
Gutch H, Maehara T, Theis FJ
in Proc. ICA 2010, 2010 [ PDF ]
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The 2010 Signal Separation Evaluation Campaign (SiSEC2010): Audio source separation.
Araki S, Ozerov A, Gowreesunker V, Sawada H, Theis FJ, Nolte G, Lutter D, Duong NQK
in Proc. ICA 2010, 2010 [ PDF ]
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The 2010 Signal Separation Evaluation Campaign (SiSEC2010): Biomedical source separation.
Araki S, Theis FJ, Nolte G, Lutter D, Ozerov A, Gowreesunker V, Sawada H, Duong NQK
in Proc. ICA 2010, 2010 [ PDF ]
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Theory paper to this one
Uncovering the structure of heterogeneus biological data: fuzzy graph partitioning in the k-partite setting.
Blöchl F*, Hartsperger ML*, Stümpflen V, Theis FJ
in Proc. GCB 2010, 2010 [ PDF ]
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Biomedical Signal Analysis - Contemporary Methods and Applications.
Theis FJ, Meyer-Baese A
MIT Press, 2010
2009
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A multi-scale model incorporating Boolean inference to spatial dynamics.
Spatial analysis of expression patterns predicts genetic interactions at the mid-hindbrain boundary.
Wittmann DM, Blöchl F, Prakash N, Trümbach D, Wurst W, Theis FJ
PLoS Computational Biology, 5(11):e1000569, 2009 [ PDF | PubMed ]
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Continuous homologues of discrete dynamics and mathematical properties thereof - basis of the odefy tool
Transforming Boolean Models to Continuous Models: Methodology and Application to T-Cell Receptor Signaling.
Wittmann DM, Krumsiek J, Saez-Rodriguez J, Lauffenburger DA, Klamt S, Theis FJ
BMC Systems Biology, 3:98, 2009 [ PDF | PubMed ]
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Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine.
Webb KJ, Norton WHJ, Trümbach D, Meijer AH, Ninkovic J, Topp S, Heck D, Marr C, Wurst W, Theis FJ, Spaink HP, Bally-Cuif L
Genome Biology, 10(7):R81, 2009 [ PDF | PubMed ]
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A review of using hypergraphs for modeling biological networks.
Hypergraphs and cellular networks.
Klamt S, Haus U, Theis FJ
PLoS Computational Biology, 5:5, 2009 [ PDF | PubMed ]
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How to separate overlapping channels in fluorescence microscopy without knowing the spectra - software
Blind source separation techniques for the decomposition of multiply labeled fluorescence images.
Neher RA, Mitkovski M, Kirchhoff F, Neher E, Theis FJ, Zeug A
Biophysical Journal, 96(9):3791-3800, 2009 [ PDF | PubMed ]
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ICA, kernel methods and nonnegativity: New paradigms for dynamical component analysis of fMRI data.
Gruber P, Meyer-Baese A, Foo S, Theis FJ
Engineering Applications of Artificial Intelligence, 22(4-5):497-504, 2009 [ PDF ]
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Optimization Techniques for Data Representations with Biomedical Applications.
Georgiev PG, Theis FJ
in Handbook of Optimization in Medicine, 2009 [ PDF ]
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Reconstruction of graphs based on random walks.
Wittmann DM, Schmidl D, Blöchl F, Theis FJ
Journal of Theoretical Computer Science, 2009 [ PDF ]
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Proof-of-principle paper for the ERC grant LatentCauses
Estimating hidden influences in metabolic and gene regulatory networks.
Blöchl F, Theis FJ
in Proc. ICA 2009, 2009 [ PDF ]
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Hierarchical Extraction of Independent Subspaces of Unknown Dimensions.
Gruber P, Gutch HW, Theis FJ
in Proc. ICA 2009, 2009 [ PDF ]
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Soft Dimension Reduction for ICA by Joint Diagonalization on the Stiefel Manifold.
Theis FJ, Cason TP, Absil P-
in Proc. ICA 2009, 2009 [ PDF ]
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Blind Decomposition of Spectral Imaging Microscopy: A Study on Artificial and Real Test Data.
Theis FJ, Neher R, Zeug A
in Proc. ICA 2009, 2009 [ PDF ]
2008
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An evolutionary and structural characterization of mammalian protein complex organization.
Wong P, Althammer S, Hildebrand A, Kirschner A, Pagel P, Geissler B, Smialowski P, Blöchl F, Oesterheld M, Schmidt T, Strack N, Theis FJ, Ruepp A, Frishman D
BMC Genomics, 9(1):629, 2008 [ PDF | PubMed ]
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Biostatistical study of a patient with extreme rapid cycling syndrome.
Episode-specific differential gene expression of peripheral blood mononuclear cells in rapid cycling supports novel treatment approaches.
Begemann M*, Sargin D*, Rossner MJ, Bartels C, Theis FJ, Wichert SP, Stender N, Fischer B, Sperling S, Stawicki S, Wiedl A, Falkai P, Nave KA, Ehrenreich H
Mol Med, 14(9-10):546-552, 2008 [ PDF | PubMed ]
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Erythropoietin enhances hippocampal long-term potentiation and memory.
Adamcio B*, Sargin D*, Stradomska A*, Medrihan L, Gertler C, Theis FJ, Zhang M, Müller M, Hassouna I, Hannke K, Sperling S, Radyushkin K, El-Kordi A, Schulze L, Ronnenberg A, Wolf F, Brose N, Rhee J, Zhang W, Ehrenreich H
BMC Biology, 6:37, 2008 [ PDF | PubMed ]
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Application of source separation techniques to microarray data.
Knowledge-based Gene Expression Classification via Matrix Factorization.
Schachtner R, Lutter D, Knollmüller P, Tomé AM, Theis FJ, Schmitz G, Stetter M, Vilda PG, Lang EW
Bioinformatics, 24(15):1688-1697, 2008 [ PDF | PubMed ]
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Applying blind source separation techniques to microarray profiles.
Analyzing M-CSF dependent monocyte/macrophage differentiation: expression modes and meta-modes derived from an independent component analysis.
Lutter D, Ugocsai P, Grandl M, Orso E, Theis FJ, Lang EW, Schmitz G
BMC Bioinformatics, 9:100, 2008 [ PDF | PubMed ]
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Effective Emission Tomography Image Reconstruction Algorithms for SPECT Data.
Ramírez J, Górriz JM, Gómez-Río M, Romero A, Chaves R, Lassl A, Rodríguez A, Puntonet CG, Theis FJ, Lang EW
in Proc. ICCS 2008, 2008
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Matrix factorization based on joint diagonalization with spatiotemporal constraints.
A Robust Model for Spatiotemporal Dependencies.
Theis FJ, Gruber P, Keck IR, Lang EW
Neurocomputing, 71(10-12):2209-2216, 2008 [ PDF ]
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Gene regulatory networks simplified by nonlinear balanced truncation.
Meyer-Baese A, Theis FJ
in SPIE Proceedings, 2008 [ PDF ]
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Stochastic Stability Analysis of the Heat Shock Response in E. Coli.
Meyer-Baese A, Theis FJ
in Proc. BIOCOMP '08, 2008 [ PDF ]
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Hybridizing sparse component analysis with genetic algorithms for microarray analysis.
Stadlthanner K, Theis FJ, Lang EW, Tomé AM, Puntonet CG, Górriz JM
Neurocomputing, 2008 [ PDF ]
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Money Circulation, Trackable Items, and the Emergence of Universal Human Mobility Patterns.
Brockmann D, Theis FJ
IEEE Pervasive Computing, 7(4):28-35, 2008 [ PDF ]
2007
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Robust sparse component analysis based on a generalized Hough transform.
Theis FJ, Georgiev P, Cichocki A
EURASIP Journal on Applied Signal Processing, 2007 [ PDF ]
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Generalization of source separation to indepedent subspaces of unknown sizes - see uniqueness proof
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Joint low-rank approximation for extracting non-Gaussian subspaces.
Kawanabe M, Theis FJ
Signal Processing, 2007 [ PDF ]
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Independent Subspace Analysis is unique, given irreducibility.
Gutch H, Theis FJ
in Proc. ICA 2007, 2007 [ PDF ]
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Pivot selection strategies in Jacobi joint block-diagonalization.
Févotte C, Theis FJ
in Proc. ICA 2007, 2007 [ PDF ]
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Blind Matrix Decomposition Techniques to Identify Marker Genes from Microarrays.
Schachtner R, Lutter D, Theis FJ, Lang EW, Tomé AM, Saéz JMG, Puntonet CG
in Proc. ICA 2007, 2007 [ PDF ]
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A toolbox for model-free analysis of fMRI data.
Gruber P, Kohler C, Theis FJ
in Proc. ICA 2007, 2007 [ PDF ]
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Identifiability conditions and subspace clustering in sparse BSS.
Georgiev P, Theis FJ, Ralescu A
in Proc. ICA 2007, 2007 [ PDF ]
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Statistical analysis of sample-size effects in ICA.
Herrmann JM, Theis FJ
in Intelligent Data Engineering and Automated Learning, 2007 [ PDF ]
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Blind Matrix Decomposition Via Genetic Optimization of Sparseness and Nonnegativity Constraints.
Stadlthanner K, Theis FJ, Lang EW, Tomé AM, Puntonet CG
in Proc. ICANN 2007, 2007
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How to extract marker genes from microarray data sets.
Schachtner R, Lutter D, Theis FJ, Lang EW, Schmitz G, Tomé AM, Gomez-Vilda P
in In Proc. Conf Proc IEEE Eng Med Biol Soc 2007, 2007 [ PubMed ]
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Statistical machine learning of biomedical data.
Theis FJ
in Habilitation an der NWF II -Physik der Universit\"at Regensburg, 2007 [ PDF ]
2006
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On the use of simulated annealing to automatically assign independent components.
Böhm M, Stadlthanner K, Gruber P, Theis FJ, Lang EW, Tomé AM, Teixeira AR, Gronwald W, Kalbitzer HR
IEEE Transactions on Biomedical Engineering, 53(5):810-820, 2006 [ PDF | PubMed ]
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A k-means type algorithm for clustering subspaces in vector spaces, with some nice closed-form update rules.
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Stability Analysis of an Unsupervised Competitive Neural Network.
Meyer-Baese A, Thümmler V, Theis FJ
in Proc. IJCNN 2006, 2006
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Sparseness by iterative projections onto spheres.
Theis FJ, Tanaka T
in Proc. ICASSP 2006, 2006 [ PDF ]
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New Riemannian metrics for speeding-up the convergence of over- and underdetermined ICA.
Squartini S, Piazza F, Theis FJ
in Proc. ISCAS 2006, 2006 [ PDF ]
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On the use of joint diagonalization in blind signal processing.
Theis FJ, Inouye Y
in Proc. ISCAS 2006, 2006 [ PDF ]
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Sparse nonnegative matrix factorization applied to microarray data sets.
Stadlthanner K, Theis FJ, Lang EW, Puntonet C, Gomez-Vilda P, Tomé A, Langmann T, Schmitz G
in Proc. ICA 2006, 2006
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Estimating non-gaussian subspaces by characteristic functions.
Kawanabe M, Theis FJ
in Proc. ICA 2006, 2006 [ PDF ]
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Denoising using local projective subspace methods.
Gruber P, Stadlthanner K, Böhm M, Theis FJ, Lang EW, Tomé AM, Teixeira AR, Puntonet CG, Saéz JMG
Neurocomputing, 2006 [ PDF ]
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Analyzing gene expression profiles with ICA.
Lutter D, Stadlthanner K, Theis FJ, Lang EW, Tomé AM, Becker B, Vogt T
in Proc. BioMED 2006, 2006 [ PDF ]
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Blind Source Separation Based On Self-Organizing Neural Network.
Meyer-Baese A, Gruber P, Theis FJ, Foo S
Engineering Applications of Artificial Intelligence, 2006 [ PDF ]
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Separation of water artifacts in 2D NOESY protein spectra using congruent matrix pencils.
Stadlthanner K, Tomé AM, Theis FJ, Lang EW, Gronwald W, Kalbitzer HR
Neurocomputing, 2006 [ PDF ]
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Median-based clustering for underdetermined blind signal processing.
Theis FJ, Puntonet CG, Lang EW
IEEE Signal Processing Letters, 13(2):96-99, 2006 [ PDF ]
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Detailed comparison of sparse factorization methods in EMG data.
On the use of sparse signal decomposition in the analysis of multi-channel surface electromyograms.
Theis FJ, García GA
Signal Processing, 86(3):603-623, 2006 [ PDF ]
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A Bilinear Algorithm for Sparse Representations.
Georgiev P, Pardalos P, Theis FJ
Computational Optimization and Applications, 2006 [ PDF ]
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Optimization algorithms for sparse representations and applications.
Georgiev P, Theis FJ, Cichocki A
in Multiscale Optimization Methods and Applications, 2006 [ PDF ]
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Model-free Region Of Interest Based Analysis of fMRI Data.
Keck IR, Theis FJ, Gruber P, Lang EW, Churan J, Puntonet CG
in Proc. MELECON 2006, 2006 [ PDF ]
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Region of Interest Based Independent Component Analysis.
Keck IR, Churan J, Theis FJ, Gruber P, Lang EW, Puntonet CG
in Proc. ICONIP 2006, 2006 [ PDF ]
2005
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How to identify more components in less mixtures using sparseness constraints.
Sparse Component Analysis and Blind Source Separation of Underdetermined Mixtures.
Georgiev P, Theis FJ, Cichocki A
IEEE Transactions on Neural Networks, 16(4):992-996, 2005 [ PDF | PubMed ]
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Gradients on matrix manifolds and their chain rule.
Theis FJ
Neural Information Processing LR, 9(1):1-13, 2005 [ PDF ]
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Hybridizing Sparse Component Analysis with Genetic Algorithms for Blind Source Separation.
Stadlthanner K, Theis FJ, Lang EW, Puntonet CG
in Proc. ISBMDA 2005, 2005
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An algorithm for automatic assignment of artifact-related independent components in biomedical signal analysis.
Böhm M, Stadlthanner K, Lang EW, Theis FJ, Gruber P, Tomé AM, Teixeira AR, Puntonet CG
in Proc. IJCNN 2005, 2005
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Bispectrum-Based Statistical Tests for VAD.
Górriz JM, Ramírez J, Puntonet CG, Theis FJ, Lang EW
in Proc. ICANN 2005, 2005
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A Fast and Efficient Method for Compressing fMRI Data Sets.
Theis FJ, Tanaka T
in Proc. ICANN 2005, 2005 [ PDF ]
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Functional MRI analysis by a novel spatiotemporal ICA algorithm.
Theis FJ, Gruber P, Keck IR, Lang EW
in Proc. ICANN 2005, 2005 [ PDF ]
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Application of unsupervised clustering methods to biomedical image analysis.
Meyer-Baese A, Gruber P, Theis FJ, Wismüller A, Ritter H
in Proc. WSOM 2005, 2005 [ PDF ]
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Multidimensional independent component analysis using characteristic functions.
Theis FJ
in Proc. EUSIPCO 2005, 2005 [ PDF ]
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Spatiotemporal blind source separation using double-sided approximate joint diagonalization.
Theis FJ, Gruber P, Keck IR, Meyer-Baese A, Lang EW
in Proc. EUSIPCO 2005, 2005 [ PDF ]
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First results on uniqueness of sparse non-negative matrix factorization.
Theis FJ, Stadlthanner K, Tanaka T
in Proc. EUSIPCO 2005, 2005 [ PDF ]
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A spatiotemporal second-order algorithm for fMRI data analysis.
Theis FJ, Gruber P, Keck IR, Tomé AM, Lang EW
in Proc. CIMED 2005, 2005 [ PDF ]
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Automated clustering of ICA results for fMRI data analysis.
Keck IR, Theis FJ, Gruber P, Lang EW, Specht K, Fink G, Tomé AM, Puntonet CG
in Proc. CIMED 2005, 2005 [ PDF ]
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AutoAssign - An automated assignment tool for independent components.
Böhm M, Stadlthanner K, Tomé AM, Gruber P, Teixeira AR, Theis FJ, Puntonet CG, Lang EW
in Proc. IbPRIA 2005, 2005
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Extended sparse nonnegative matrix factorization.
Stadlthanner K, Theis FJ, Puntonet CG, Lang EW
in Proc. IWANN 2005, 2005 [ PDF ]
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A hybridization of simulated annealing and local PCA for automatic component assignment within ICA.
Böhm M, Stadlthanner K, Lang EW, Tomé AM, Gruber P, Teixeira AR, Theis FJ, Puntonet CG
in Proc. IWANN 2005, 2005
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Blind signal separation into groups of dependent signals using joint block diagonalization.
Theis FJ
in Proc. ISCAS 2005, 2005 [ PDF ]
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Sparse component analysis: a new tool for data mining.
Georgiev P, Pardalos P, Theis FJ, Cichocki A, Bakardjian H
in Data Mining in Biomedicine, 2005 [ PDF ]
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Nonlinear version of the ICA uniqueness theorem based on the one-dimensional proof
On model identifiability in analytic postnonlinear ICA.
Theis FJ, Gruber P
Neurocomputing, 2005 [ PDF ]
2004
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A constructive proof showing uniqueness of independent component analysis, basis for all later subspace&nonlinear extensions.
A new concept for separability problems in blind source separation.
Theis FJ
Neural Computation, 2004 [ PDF | PubMed ]
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Mobile decision support for transplantation patient data.
Krause A, Hartl D, Theis FJ, Stangl M, Gerauer KE, Mehlhorn AT
International Journal of Medical Informatics, 2004 [ PDF | PubMed ]
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Suchmaschinen entwickeln mit Apache Lucene.
Hardt M, Theis FJ
Software & Support Verlag, 2004 [ PDF ]
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Blind sensor characteristics estimation in a multi-sensor network applied to fMRI analysis.
Theis FJ
in Proc. ISSNIP 2004, 2004
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Blind source recovery: algorithm comparison and fusion.
Theis FJ, Georgiev P, Cichocki A
in Proc. MaxEnt 2004, 2004 [ PDF ]
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Quite old microscopy counting scheme + software using neural networks.
ZANE - an algorithm for counting labelled cells in section images.
Theis FJ, Kohl Z, Guggenberger C, Kuhn HG, Puntonet CG, Lang EW
in Proc. MEDSIP 2004, 2004
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Postnonlinear overcomplete blind source separation using sparse sources.
Theis FJ, Amari S
in Proc. ICA 2004, 2004 [ PDF ]
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Second-order blind source separation based on multi-dimensional autocovariances.
Theis FJ, Meyer-Baese A, Lang EW
in Proc. ICA 2004, 2004 [ PDF ]
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Tree-dependent and topographic independent component analysis for fMRI analysis.
Meyer-Baese A, Theis FJ, Lange O, Puntonet CG
in Proc. ICA 2004, 2004
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Denoising using local ICA and a generalized eigendecomposition with time-delayed signals.
Gruber P, Stadlthanner K, Tomé AM, Teixeira AR, Theis FJ, Puntonet CG, Lang EW
in Proc. ICA 2004, 2004 [ PDF ]
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3D spatial analysis of fMRI data on a word perception task.
Keck IR, Theis FJ, Gruber P, Lang EW, Specht K, Puntonet CG
in Proc. ICA 2004, 2004 [ PDF ]
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Blind source separation of linear mixtures with singular matrices.
Georgiev P, Theis FJ
in Proc. ICA 2004, 2004 [ PDF ]
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Quadratic independent component analysis.
Theis FJ, Nakamura W
IEICE Trans. Fundamentals, E87-A(9):2355-2363, 2004 [ PDF ]
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Uniqueness of real and complex linear independent component analysis revisited.
Theis FJ
in Proc. EUSIPCO 2004, 2004 [ PDF ]
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Sparse Representation of Data and Support Vector Machines.
Georgiev PG, Theis FJ, Ralescu A
in Proc. IPMU 2004, 2004
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Clustering of Dependent Components: A New Paradigm for fMRI Signal Detection.
Meyer-Baese A, Theis FJ, Lange O, Wismüller A
in Proc. IJCNN 2004, 2004 [ PDF ]
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Postnonlinear Blind Source Separation via Linearization Identification.
Theis FJ, Lang EW
in Proc. IJCNN 2004, 2004 [ PDF ]
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3D Spatial Analysis of fMRI Data - a Comparison of ICA and GLM Analysis on a Word Perception Task.
Keck IR, Theis FJ, Gruber P, Lang EW, Specht K, Puntonet CG
in Proc. IJCNN 2004, 2004
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Kernel-PCA Denoising of Artifact-free Protein NMR Spectra.
Stadlthanner K, Lang EW, Gruber P, Theis FJ, Tomé AM, Teixeira AR, Puntonet CG
in Proc. IJCNN 2004, 2004
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Denoising using local ICA and Kernel-PCA.
Gruber P, Theis FJ, Stadlthanner K, Lang EW, Tomé AM, Teixeira AR
in Proc. IJCNN 2004, 2004
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Robust overcomplete matrix recovery for sparse sources using a generalized Hough transform.
Theis FJ, Georgiev P, Cichocki A
in Proc. ESANN 2004, 2004 [ PDF ]
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Linearization identification and an application to BSS using a SOM.
Theis FJ, Lang E
in Proc. ESANN 2004, 2004
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Separability of analytic postnonlinear blind source separation with bounded sources.
Theis FJ, Gruber P
in Proc. ESANN 2004, 2004 [ PDF ]
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Connecting geometric independent component analysis to unsupervised learning algorithms.
Theis FJ, Gruber P, Puntonet CG, Lang EW
in Proc. EIS 2004, 2004 [ PDF ]
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Automatic Denoising using Local Independent Component Analysis.
Gruber P, Theis FJ, Tomé AM, Lang EW
in Proc. EIS 2004, 2004 [ PDF ]
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Classification of skin lesions by fluorscence diagnosis and independent component analysis.
Stockmeier HG, Bäumler W, Szeimies R-, Theis FJ, Lang EW, Puntonet CG
in Proc. BioMED 2004, 2004
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Automated counting of labelled cells in rodent brain section images.
Theis FJ, Kohl Z, Kuhn HG, Stockmeier HG, Lang EW
in Proc. BioMED 2004, 2004 [ PDF ]
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Blind source separation and sparse component analysis of overcomplete mixtures.
Georgiev P, Theis FJ, Cichocki A
in Proc. ICASSP 2004, 2004 [ PDF ]
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Complex and multi-dimensional version of the ICA uniqueness theorem based on the one-dimensional proof
Uniqueness of complex and multidimensional independent component analysis.
Theis FJ
Signal Processing, 84(5):951-956, 2004 [ PDF ]
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A Geometric Algorithm for Overcomplete Linear ICA.
Theis FJ, Lang EW, Puntonet CG
Neurocomputing, 2004 [ PDF ]
2003
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Linear Geometric ICA: Fundamentals and Algorithms.
Theis FJ, Jung A, Puntonet CG, Lang EW
Neural Computation, 2003 [ PDF | PubMed ]
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Portale und Webapplikationen mit Apache Frameworks.
Theis FJ (Hrsg.), Kuhn S, Langham M, Mueller J, Wang D, Ziegeler C
Software & Support Verlag, 2003 [ PDF ]
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Enterprise Computing fuer nicht OO-Programmierer.
Theis FJ
Java Magazin, 2003
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BEA e-World in Orlando.
Theis FJ
Java Magazin, 2003
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A matrix pencil approach to the blind source separation of artifacts in 2D NMR spectra.
Stadlthanner K, Theis FJ, Lang EW, Tomé AM, Gronwald W, Kalbitzer H-
Neural Information Processing LR, 1(3):103-110, 2003 [ PDF ]
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On the use of independent component analysis to remove water artefacts of 2D NMR protein spectra.
Stadlthanner K, Tomé AM, Theis FJ, Gronwald W, Kalbitzer H-, Lang EW
in Proc. BIOENG 2003, 2003
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PDA-based decision support and documentation for transplantation surgery data.
Krause A, Mehlhorn A, Hartl D, Theis FJ, Riedl V, Preis S, Feike K, Greiner L, Heiss K, Gerauer KE, Stangl M
in Proc. MoCoMed 2003, 2003
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SOMICA - An Application of Self-Organizing Maps to Geometric Independent Component Analysis.
Theis FJ, Puntonet C, Lang EW
in Proc. IJCNN 2003, 2003 [ PDF ]
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Local Features in Biomedical Image Clusters extracted with Independent Component Analysis.
Bauer C, Theis FJ, Baeumler W, Lang EW
in Proc. IJCNN 2003, 2003 [ PDF ]
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New Geometric ICA Approach for Blind Source Separation.
Rodriguez-Alvarez M, Rojas F, Puntonet CG, Theis FJ, Lang EW, Clemente RM
in Intelligent Systems Design and Applications, ISDA 2003, 2003 [ PDF ]
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A new ICA method based on a lattice of the observation space.
Rodriguez-Alvarez M, Rojas F, Puntonet CG, Theis FJ, Lang EW
in Proc. Fusion 2003, 2003 [ PDF ]
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Adaptive Signal Analysis of Immunological Data.
Theis FJ, Hartl D, Krauss-Etschmann S, Lang EW
in Proc. Fusion 2003, 2003 [ PDF ]
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Removing Water Artefacts from 2D Protein NMR Spectra using GEVD with Congruent Matrix Pencils.
Stadlthanner K, Tomé AM, Theis FJ, Gronwald W, Kalbitzer H-, Lang EW
in Proc. ISSPA 2003, 2003 [ PDF ]
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Neural Network Signal Analysis in Immunology.
Theis FJ, Hartl D, Krauss-Etschmann S, Lang EW
in Proc. ISSPA 2003, 2003 [ PDF ]
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An Adaptive Approach to Blind Source Separation Using a Self-Organizing Map and a Neural Gas.
Theis FJ, Alvarez MR, Puntonet C, Lang EW
in Proc. IWANN 2003, 2003
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Generalizing Geometric ICA to Nonlinear Settings.
Theis FJ, Puntonet C, Lang EW
in Proc. IWANN 2003, 2003
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A Generalized Eigendecomposition Approach Using Matrix Pencils to Remove Artifacts from 2D NMR Spectra.
Stadlthanner K, Tomé AM, Theis FJ, Lang EW
in Proc. IWANN 2003, 2003
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An Improved Geometric Overcomplete Blind Source Separation Algorithm.
Theis FJ, Puntonet C, Lang EW
in Proc. IWANN 2003, 2003
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Blind Source Separation of Water Artefacts in NMR Spectra using a Matrix Pencil.
Stadlthanner K, Tomé AM, Theis FJ, Gronwald W, Kalbitzer H-, Lang EW
in Proc. ICA 2003, 2003
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A Geometric ICA Procedure Based on a Lattice of the Observation Space.
Alvarez MR, Rojas F, Puntonet CG, Ortega J, Theis FJ, Lang EW
in Proc. ICA 2003, 2003
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A Histogram-Based Overcomplete ICA Algorithm.
Theis FJ, Puntonet CG, Lang EW
in Proc. ICA 2003, 2003 [ PDF ]
2002
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Professionelles Reporting, XML2XL: Transformation von XML-Dokumenten in Excel mit POI und dom4j.
Theis FJ
Java Magazin, 2002
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Die Town-Datenbank-API.
Theis FJ
Java Spektrum, 2002
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Turbine, Teil 2: Entwicklung einer Shop-Anwendung.
Theis FJ
Java Magazin, 2002
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Mobile application for transplantation surgery data.
Krause A, Mehlhorn A, Hartl D, Theis FJ, Riedl V, Preis S, Feike K, Greiner L, Heiss K, Gerauer KE, Stangl M
in Medica 2002, Bayern Innovativ - Poster Session, 2002 [ PDF ]
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Overcomplete ICA with a Geometric Algorithm.
Theis FJ, Lang EW, Westenhuber T, Puntonet CG
in Proc. ICANN 2002, 2002
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Extending Geometric ICA to Overcomplete and High-Dimensional BSS-Problems.
Theis FJ, Lang EW, Rojas F, Puntonet CG
in Signal Processing, Pattern Recognition & Applications (Proc. SPPRA 2002), 2002
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Comparison of maximum entropy and minimal mutual information in a nonlinear setting.
Theis FJ, Bauer C, Lang EW
Signal Processing, 2002 [ PDF ]
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Formalization of the Two-Step Approach to Overcomplete BSS.
Theis FJ, Lang EW
in Proc. SIP 2002, 2002 [ PDF ]
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A Theoretical Framework for Overcomplete Geometric BMMR.
Theis FJ, Lang EW, Lautenschlager MA, Puntonet CG
in Proc. SIP 2002, 2002 [ PDF ]
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Geometric ICA in overcomplete and high-dimensional settings.
Theis FJ
in Workshop Report II of the Graduiertenkolleg, 2002
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How to generalize Geometric ICA to higher dimensions.
Theis FJ, Lang EW
in Proc. ESANN 2002, 2002 [ PDF ]
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2001
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A Geometric Algorithm for Overcomplete Linear ICA.
Theis FJ
in Workshop Report I of the Graduiertenkolleg, 2001 [ PDF ]
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Maximum Entropy and Minimal Mutual Information in a Nonlinear Model.
Theis FJ, Lang EW
in Proc. ICA 2001, 2001 [ PDF ]
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FastGeo - A Histogram based Approach to Linear Geometric ICA.
Jung A, Theis FJ, Puntonet CG, Lang EW
in Proc. ICA 2001, 2001 [ PDF ]
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A Theoretic Model for Geometric Linear ICA.
Theis FJ, Jung A, Lang EW, Puntonet CG
in Proc. ICA 2001, 2001 [ PDF ]
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Pattern Repulsion Revisited.
Theis FJ, Bauer C, Puntonet C, Lang EW
in Proc. IWANN 2001, 2001 [ PDF ]
