Quantitative proteomic analysis reveals induction of premature senescence in human umbilical vein endothelial cells exposed to chronic low-dose rate gamma-radiation. Yentrapalli R, Azimzadeh O, Barjaktarovic Z, Sarioglu H, Wojcik A, Harms-Ringdahl M, Atkinson MJ, Haghdoost S, Tapio S. Proteomics. 2013 Jan 24. doi: 10.1002/pmic.201200463 PubMed

Azimzadeh O, Scherthan H, Yentrapalli R, Barjaktarovic Z, Ueffing M, Conrad M, Neff F, Calzada-Wack J, Aubele M, Buske C, Atkinson MJ, Hauck SM, Tapio S. Label-free protein profiling of formalin-fixed paraffin-embedded (FFPE) heart tissue reveals immediate mitochondrial impairment after ionising radiation. J Proteomics. 2012 Apr 18;75(8):2384-95. Epub 2012 Feb 23. PubMed

Barjaktarovic Z, Anastasov N, Azimzadeh O, Sriharshan A, Sarioglu H, Ueffing M, Tammio H, Hakanen A, Leszczynski D, Atkinson MJ, Tapio S. Integrative proteomic and microRNA analysis of primary human coronary artery endothelial cells exposed to low-dose gamma radiation. Radiat Environ Biophys. 2012 Nov 9. [Epub ahead of print] PubMed

Buters JTM, Thibaudon M, Smith M, Kennedy R, Rantio-Lehtimäki A, Albertini R, Reese G, Weber B, Galan C, Brandao R, Antunes CM, Jäger S, Berger U, Celenk S, Grewling Ł, Jackowiak B, Sauliene I, Weichenmeier I, Pusch G, Sarioglu H, Ueffing M, Behrendt H, Prank M, Sofiev M, Cecchi L, The HIALINE working group. Release of Bet v 1 from birch pollen from 5 European countries. Results from the HIALINE study, Atmospheric Environment, Volume 55, August 2012, Pages 496-505, ISSN 1352-2310, 10.1016/j.atmosenv.2012.01.054. ScienceDirect

Elsner M, Rauser S, Maier S, Schöne C, Balluff B, Meding S, Jung G, Nipp M, Sarioglu H, Maccarrone G, Aichler M, Feuchtinger A, Langer R, Jütting U, Feith M, Küster B, Ueffing M, Zitzelsberger H, Höfler H, Walch A. MALDI imaging mass spectrometry reveals COX7A2, TAGLN2 and S100-A10 as novel prognostic markers in Barrett's adenocarcinoma. J Proteomics. 2012 Feb 17. [Epub ahead of print] PubMed

Fröhlich A, Gaupels F, Sarioglu H, Holzmeister C, Spannagl M, Durner J, Lindermayr C. Looking deep inside: Detection of low-abundant proteins in leave extracts of Arabidopsis thaliana and phloem exudates of Cucurbita maxima. Plant Physiol. 2012 May 3. [Epub ahead of print] PubMed

Han Y, Yu G, Sarioglu H, Caballero-Martinez A, Schlott F, Ueffing M, Haase H, Peschel C, Krackhardt AM. Proteomic investigation of the interactome of FMNL1 in hematopoietic cells unveils a role in calcium-dependent membrane plasticity. J Proteomics. 2012 Nov 24. doi:pii: S1874-3919(12)00756-7. 10.1016/j.jprot.2012.11.015. [Epub ahead of print] PubMed

Meding S, Balluff B, Elsner M, Schöne C, Rauser S, Nitsche U, Maak M, Schäfer A, Hauck SM, Ueffing M, Langer R, Höfler H, Friess H, Rosenberg R, Walch A. Tissue Based Proteomics Reveals FXYD3, S100A11 and GSTM3 as Novel Markers for Regional Lymph Node Metastasis in Colon Cancer. J Pathol. 2012 Mar 19. doi: 10.1002/path.4021. [Epub ahead of print] PubMed

Sriharshan A, Boldt K, Sarioglu H, Barjaktarovic Z, Azimzadeh O, Hieber L, Zitzelsberger H, Ueffing M, Atkinson MJ, Tapio S. Proteomic analysis by SILAC and 2D-DIGE reveals radiation-induced endothelial response: Four key pathways. J Proteomics. 2012 Feb 20. [Epub ahead of print] PubMed

Azimzadeh O., Scherthan H., Sarioglu H., Barjaktarovic Z., Conrad M., Vogt A., Calzada-Wack J., Neff F., Aubele M., Buske C., Atkinson M.J., Tapio S.: Rapid proteomic remodelling of cardiac tissue caused by total body ionizing radiation. Proteomics 11, 3299-3311 (2011) PubMed

Balluff B, Rauser S, Meding S, Elsner M, Schöne C, Feuchtinger A, Schuhmacher C, Novotny A, Jütting U, Maccarrone G, Sarioglu H, Ueffing M, Braselmann H, Zitzelsberger H, Schmid RM, Höfler H, Ebert MP, Walch A. MALDI Imaging Identifies Prognostic Seven-Protein Signature of Novel Tissue Markers in Intestinal-TypeGastric Cancer. Am J Pathol. 2011 Oct 17. [Epub ahead of print] PubMed

Barjaktarovic Z, Schmaltz D, Shyla A, Azimzadeh O, Schulz S, Haagen J, Dörr W, Sarioglu H, Schäfer A, Atkinson MJ, Zischka H, Tapio S. Radiation-induced signaling results in mitochondrial impairment in mouse heart at 4 weeks after exposure to X-rays. PLoS One. 2011;6(12):e27811. Epub 2011 Dec 8. PubMed PMID: 22174747; PubMed Central PMCID: PMC3234240. PubMed

Boldt K, Mans DA, Won J, van Reeuwijk J, Vogt A, Kinkl N, Letteboer SJ, Hicks WL, Hurd RE, Naggert JK, Texier Y, den Hollander AI, Koenekoop RK, Bennett J, Cremers FP, Gloeckner CJ, Nishina PM, Roepman R, Ueffing M. Disruption of intraflagellar protein transport in photoreceptor cilia causes Leber congenital amaurosis in humans and mice. J Clin Invest. 2011 Jun 1;121(6):2169-80. doi: 10.1172/JCI45627. Epub 2011 May 23. PubMed

Holzmeister C, Fröhlich A, Sarioglu H, Bauer N, Durner J, Lindermayr C. Proteomic analysis of defense response of wildtype Arabidopsis thaliana and plants with impaired NO- homeostasis. Proteomics. 2011 Mar 9. doi: 10.1002/pmic.201000652. [Epub ahead of print]  PubMed

Nipp M, Elsner M, Balluff B, Meding S, Sarioglu H, Ueffing M, Rauser S, Unger K, Höfler H, Walch A, Zitzelsberger H. S100-A10, thioredoxin, and S100-A6 as biomarkers of papillary thyroid carcinoma with lymph node metastasis identified by MALDI Imaging. J Mol Med (Berl). 2011 Sep 22. [Epub ahead of print]   PubMed

Piccoli G, Condliffe SB, Bauer M, Giesert F, Boldt K, De Astis S, Meixner A, Sarioglu H, Vogt-Weisenhorn DM, Wurst W, Gloeckner CJ, Matteoli M, Sala C, Ueffing M. LRRK2 Controls Synaptic Vesicle Storage and Mobilization within the Recycling Pool. J Neurosci. 2011 Feb 9;31(6):2225-2237. PubMed

Azimzadeh O, Barjaktarovic Z, Aubele M, Calzada-Wack J, Sarioglu H, Atkinson M, Tapio S: Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics. J Proteome Res. 2010 Jul 6. [Epub ahead of print] PubMed

Glasmacher E, Hoefig KP, Vogel KU, Rath N, Du L, Wolf C, Kremmer E, Wang X, Heissmeyer V: Roquin binds inducible costimulator mRNA and effectors of mRNA decay to induce microRNA-independent post-transcriptional repression. Nat Immunol. 2010 Jul 18. [Epub ahead of print] PubMed

Gloeckner CJ, Boldt K, von Zweydorf F, Helm S, Wiesent L, Sarioglu H, Ueffing M. Phosphopeptide analysis reveals two discrete clusters of phosphorylation in the N-terminus and the Roc domain of the Parkinson-disease associated protein kinase LRRK2. J Proteome Res. 2010 Apr 5;9(4):1738-45.  PubMed

Gloriam DE, Orchard S, Bertinetti D, Björling E, Bongcam-Rudloff E, Borrebaeck CA, Bourbeillon J, Bradbury AR, de Daruvar A, Dübel S, Frank R, Gibson TJ, Gold L, Haslam N, Herberg FW, Hiltke T, Hoheisel JD, Kerrien S, Koegl M, Konthur Z, Korn B, Landegren U, Montecchi-Palazzi L, Palcy S, Rodriguez H, Schweinsberg S, Sievert V, Stoevesandt O, Taussig MJ, Ueffing M, Uhlén M, van der Maarel S, Wingren C, Woollard P, Sherman DJ, Hermjakob H: A community standard format for the representation of protein affinity reagents. Mol Cell Proteomics. 2010 Jan;9(1):1-10.  PubMed

Hauck SM, Dietter J, Kramer RL, Hofmaier F, Zipplies JK, Amann B, Feuchtinger A, Deeg CA, Ueffing M: Deciphering membrane-associated molecular processes in target tissue of autoimmune uveitis by label-free quantitative mass spectrometry. Mol Cell Proteomics.  2010 Jul 4. [Epub ahead of print]. PubMed

Kinzel D, Boldt K, Davis EE, Burtscher I, Trümbach D, Diplas B, Attié-Bitach T, Wurst W, Katsanis N, Ueffing M, Lickert H.: Pitchfork regulates primary cilia disassembly and left-right asymmetry. Dev Cell. 2010 Jul 20;19(1):66-77. [PubMed - in process] PubMed

Meixner A, Boldt K, Van Troys M, Askenazi M, Gloeckner CJ, Bauer M, Marto JA, Ampe C, Kinkl N, Ueffing M.: A QUICK screen for Lrrk2 interaction partners - leucine-rich repeat kinase 2 is involved in actin cytoskeleton dynamics. Mol Cell Proteomics. 2010 Sep 27. [Epub ahead of print] PubMed

Pluder F, Barjaktarovic Z, Azimzadeh O, Mörtl S, Krämer A, Steininger S, Sarioglu H, Leszczynski D, Nylund R, Hakanen A, Sriharshan A, Atkinson MJ, Tapio S: Low-dose irradiation causes rapid alterations to the proteome of the human endothelial cell line EA.hy926. Radiat Environ Biophys. 2010 Nov 23. [Epub ahead of print] PubMed

Zipplies JK, Hauck SM, Schöffmann S, Amann B, van der Meijden CH, Stangassinger M, Ueffing M, Deeg C: Kininogen in autoimmune uveitis: decrease in peripheral blood stream versus increase in target tissue. Invest Ophthalmol Vis Sci. 2010 Jan;51(1):375-82. Epub 2009 Aug 20.  PubMed

Zipplies JK, Kirschfink M, Amann B, Hauck SM, Stangassinger M, Deeg CA: Complement factor B expression profile in a spontaneous uveitis model. Immunobiology. 2010 Mar 1. [Epub ahead of print]  PubMed

Apweiler R, Aslanidis C, Deufel T, Gerstner A, Hansen J, Hochstrasser D, Kellner R, Kubicek M, Lottspeich F, Maser E, Mewes HW, Meyer HE, Müllner S, Mutter W, Neumaier M, Nollau P, Nothwang HG, Ponten F, Radbruch A, Reinert K, Rothe G, Stockinger H, Tarnok A, Taussig MJ, Thiel A, Thiery J, Ueffing M, Valet G, Vandekerckhove J, Verhuven W, Wagener C, Wagner O, Schmitz G: Approaching clinical proteomics: current state and future fields of application in fluid proteomics. Clin Chem Lab Med. 2009;47(6):724-44. PubMed

Bauer M, Kinkl N, Meixner A, Kremmer E, Riemenschneider M, Förstl H, Gasser T, Ueffing M: Prevention of interferon-stimulated gene expression using microRNA-designed hairpins. Gene Ther. 2009 Jan; 16(1): 142-7 PubMed

Becker KF, Walch A, Ueffing M: Protein analysis of tissues--current views and clinical perspectives. Virchows Arch. 2009 Aug;455(2):191-2. Epub 2009 Jun 26. PubMed

Braun RJ, Kinkl N, Zischka H, Ueffing M: 16-BAC/SDS-PAGE Analysis of Membrane Proteins of Yeast Mitochondria Purified by Free Flow Electrophoresis. Methods Mo Biol. 2009; 528:83-107 PubMed

Gloeckner CJ, Schumacher A, Boldt K, Ueffing M: The Parkinson disease-associated protein kinase LRRK2 exhibits MAPKKK activity and phosphorylates MKK3/6 and MKK4/7, in vitro.  J Neurochem. 2009 May;109(4):959-68. Epub PubMed

Gloeckner CJ, Boldt K, Schumacher A, Ueffing M: Tandem Affinity Purification of Protein Complexes from Mammalian Cells by the Strep/FLAG (SF)-TAP Tag. Methods Mol Biol. 2009;564:359-72. PubMed

Gloeckner CJ, Boldt K, Ueffing M.: Strep/FLAG tandem affinity purification (SF-TAP) to study protein interactions. Curr Protoc Protein Sci. 2009 Aug;Chapter 19:Unit19.20. PubMed

Hadian K, Vincendeau M, Mäusbacher N, Nagel D, Hauck SM, Ueffing M, Loyter A, Werner T, Wolff H, Brack-Werner R: Identification of a heterogeneous nuclear ribonucleoprotein-recognition region in the HIV Rev protein. J Biol Chem. 2009 Nov 27;284(48):33384-91. PubMed

Kortvely E, Hauck SM, Duetsch G, Gloeckner CJ, Kremmer E, Alge-Priglinger CS, Deeg C, Ueffing M: ARMS2 is a constituent of the extracellular matrix providing a link between familial and sporadic age-related macular degenerations. Invest Ophthalmol Vis Sci. 2009 Aug 20. [Epub ahead of print] PubMed

Paquet-Durand F, Hauck SM, van Veen T, Ueffing M, Ekström P: PKG activity causes photoreceptor cell death in two retinitis pigmentosa models. J Neurochem. 2009 Feb; 108(3); 796-810 PubMed

Zipplies JK, Hauck SM, Schöffmann S, Amann B, van der Meijden CH, Stangassinger M, Ueffing M, Deeg C: Kininogen is decreased in peripheral blood stream but increased in target tissue of autoimmune uveitis. Invest Ophthalmol Vis Sci. 2009 Aug 20. [Epub ahead of print] PubMed

Zipplies, JK, Hauck SM, Schoeffmann S, Amann B, Stangassinger M, Ueffing M, Deeg CA: Serum PEDF Levels Are Decreased in a Spontaneous Animal Model for Human Autoimmune Uveitis, J Proteome Res. 2009 Feb; 8(2) 992-8 PubMed