Publications

2020
Altmann, M. ; Altmann, S. ; Rodriguez, P.A. ; Weller, B. ; Elorduy Vergara, L. ; Palme, J. ; Marin De La Rosa, N.A. ; Sauer, M. ; Wenig, M. ; Villaécija-Aguilar, J.A. ; Sales, J. ; Lin, C.-W. ; Pandiarajan, R. ; Young, V. ; Strobel, A. ; Gross, L. ; Carbonnel, S. ; Kugler, K.G. ; Garcia-Molina ; Bassel, G.W. ; Falter, C. ; Mayer, K.F.X. ; Gutjahr, C. ; Vlot, A.C. ; Grill, E. ; Falter-Braun, P.
Nature 584:E34 (2020)
Altmann, M. ; Altmann, S. ; Rodriguez, P.A. ; Weller, B. ; Elorduy Vergara, L. ; Palme, J. ; Marin De La Rosa, N.A. ; Sauer, M. ; Wenig, M. ; Villaécija-Aguilar, J.A. ; Sales, J. ; Lin, C.-W. ; Pandiarajan, R. ; Young, V. ; Strobel, A. ; Gross, L. ; Carbonnel, S. ; Kugler, K.G. ; Garcia-Molina ; Bassel, G.W. ; Falter, C. ; Mayer, K.F.X. ; Gutjahr, C. ; Vlot, A.C. ; Grill, E. ; Falter-Braun, P.
Nature 583, 271-276 (2020)
Nussbaumer, T. ; Debnath, O. ; Wagner, C. ; Heidari, P.
Gene Rep. 19:100649 (2020)
Wierbowski, S.D. ; Vo, T.V. ; Falter-Braun, P. ; Jobe, T.O. ; Kruse, L.H. ; Wei, X. ; Liang, J. ; Meyer, M.J. ; Akturk, N. ; Rivera-Erick, C.A. ; Cordero, N.A. ; Paramo, M.I. ; Shayhidin, E.E. ; Bertolotti, M. ; Tippens, N.D. ; Akther, K. ; Sharma, R. ; Katayose, Y. ; Salehi-Ashtiani, K. ; Hao, T. ; Ronald, P.C. ; Ecker, J.R. ; Schweitzer, P.A. ; Kikuchi, S. ; Mizuno, H. ; Hill, D.E. ; Vidal, M. ; Moghe, G.D. ; McCouch, S.R. ; Yu, H.
Proc. Natl. Acad. Sci. U.S.A. 117, 11836-11842 (2020)
Lantzouni, O. ; Alkofer, A. ; Falter-Braun, P. ; Schwechheimer, C.
Plant Cell 32, 1018-1034 (2020)
Mergner, J. ; Frejno, M. ; List, M. ; Papacek, M. ; Chen, X. ; Chaudhary, A. ; Samaras, P. ; Richter, S. ; Shikata, H. ; Messerer, M. ; Lang, D. ; Altmann, S. ; Cyprys, P. ; Zolg, D.P. ; Mathieson, T. ; Bantscheff, M. ; Hazarika, R.R. ; Schmidt, T. ; Dawid, C. ; Dunkel, A. ; Hofmann, T. ; Sprunck, S. ; Falter-Braun, P. ; Johannes, F. ; Mayer, K.F.X. ; Jürgens, G. ; Wilhelm, M. ; Baumbach, J. ; Grill, E. ; Schneitz, K. ; Schwechheimer, C. ; Kuster, B.
Nature 579, 409-414 (2020)
2019
Kuhl, T. ; Felder, M. ; Nussbaumer, T. ; Fischer, D. ; Kublik, S. ; Chowdhury, S.P. ; Schloter, M. ; Rothballer, M.
Microbio. Res. Ann. 8, e01106-19 (2019)
Kalde, M. ; Elliott, L. ; Ravikumar, R. ; Rybak, K. ; Altmann, M. ; Klaeger, S. ; Wiese, C. ; Abele, M. ; Al, B. ; Kalbfuß, N. ; Qi, X. ; Steiner, A. ; Meng, C. ; Zheng, H. ; Kuster, B. ; Falter-Braun, P. ; Ludwig, C. ; Moore, I. ; Assaad, F.F.
Plant J. 100, 279-297 (2019)
Rodriguez, P.A. ; Rothballer, M. ; Chowdhury, S.P. ; Nussbaumer, T. ; Gutjahr, C. ; Falter-Braun, P.
Mol. Plant 12, 804-821 (2019)
Falter-Braun, P. ; Brady, S. ; Gutiérrez, R.A. ; Coruzzi, G. ; Krouk, G.
Mol. Plant 12, 727-730 (2019)
Hartmann, A. ; Fischer, D. ; Kinzel, L. ; Chowdhury, S.P. ; Hofmann, A. ; Baldani, J.I. ; Rothballer, M.
J. Adv. Res. 19, 3-13 (2019)
Rodrigo Quejigo, J. ; Tejedor-Sanz, S. ; Schroll, R. ; Esteve-Núñez, A.
Bioelectrochem. 128, 283-290 (2019)
Jin, X. ; Kengara, F.O. ; Yue, X. ; Wang, F. ; Schroll, R. ; Munch, J.C. ; Gu, C. ; Jiang, X.
Sci. Total Environ. 676, 420-428 (2019)
Chowdhury, S.P. ; Babin, D. ; Sandmann, M. ; Jacquiod, S. ; Sommermann, L. ; Sørensen, S.J. ; Fliessbach, A. ; Mäder, P. ; Geistlinger, J. ; Smalla, K. ; Rothballer, M. ; Grosch, R.
Environ. Microbiol. 21, 2426-2439 (2019)
Marin De La Rosa, N.A. ; Lin, C.-W. ; Kang, Y.J. ; Dhondt, S. ; Gonzalez, N. ; Inzé, D. ; Falter-Braun, P.
New Phytol. 223, 783-797 (2019)
Fayeulle, A. ; Veignie, E. ; Schroll, R. ; Munch, J.C. ; Rafin, C.
J. Soils Sediments 19, 3056-3067 (2019)
Rauer, D. ; Hulpusch, C. ; Reiger, M. ; Nussbaumer, T. ; Obersteiner, A. ; Rothballer, M. ; Häring, F. ; Damialis, A. ; Traidl-Hoffmann, C. ; Neumann, A.U. ; Gilles-Stein, S.
Exp. Dermatol. 28, E6-E7 (2019)
Kengara, F.O. ; Dörfler, U. ; Welzl, G. ; Munch, J.-C. ; Schroll, R.
Environ. Sci. Pollut. Res. 26, 8779-8788 (2019)
2018
Zhu, X. ; Schroll, R. ; Wang, Y. ; Dörfler, U. ; Zhu, L. ; Xing, B. ; Zhang, Y. ; Chen, B.
Abstr. Pap. Am. Chem. Soc. 256 (2018)
Ravikumar, R. ; Kalbfuß, N. ; Gendre, D. ; Steiner, A. ; Altmann, M. ; Altmann, S. ; Rybak, K. ; Edelmann, H. ; Stephan, F. ; Lampe, M. ; Facher, E. ; Wanner, G. ; Falter-Braun, P. ; Bhalerao, R.P. ; Assaad, F.F.
Development 145:dev169201 (2018)
Anderson, A.C. ; Rothballer, M. ; Altenburger, M.J. ; Woelber, J.P. ; Karygianni, L. ; Lagkouvardos, I. ; Hellwig, E. ; Al-Ahmad, A.
Sci. Rep. 8:14202 (2018)
Benckiser, G. ; Hartmann, A. ; Kumar, K.G. ; Honermeier, B.
Front. Plant Sci. 9:931 (2018)
Altmann, M. ; Altmann, S. ; Falter, C. ; Falter-Braun, P.
Curr. Protoc. Plant Biol. 26:e20067 (2018)
Kljujev, I. ; Raicevic, V. ; Jovicic-Petrovic, J. ; Vujovic, B. ; Mirkovic, M. ; Rothballer, M.
Microb. Pathog. 120, 23-31 (2018)
Nguyen, N.K. ; Dörfler, U. ; Welzl, G. ; Munch, J.C. ; Schroll, R. ; Suhadolc, M.
Sci. Total Environ. 627, 544-552 (2018)
Kljujev, I. ; Raicevic, V. ; Vujovic, B. ; Rothballer, M. ; Schmid, M.
Microb. Pathog. 115, 199-207 (2018)
Queligo, J. R. ; Domínguez-Garay, A. ; Dörfler, U. ; Schroll, R. ; Esteve-Núñez, A.
Soil Biol. Biochem. 116, 131-138 (2018)
Zhu, X. ; Schroll, R. ; Dörfler, U. ; Chen, B.
Ecotoxicol. Environ. Saf. 149, 182-189 (2018)
2017
Jin, X. ; Kengara, F.O. ; Wang, F. ; Gu, C. ; Yang, X. ; Dörfler, U. ; Schroll, R. ; Munch, J.-C. ; Jiang, X.
Acta Pedol. Sin. 54, 108-117 (2017)
Friesner, J. ; Assmann, S.M. ; Bastow, R. ; Bailey-Serres, J. ; Beynon, J. ; Brendel, V. ; Buell, C.R. ; Bucksch, A. ; Busch, W. ; Demura, T. ; Dinneny, J.R. ; Doherty, C.J. ; Eveland, A.L. ; Falter-Braun, P. ; Gehan, M.A. ; Gonzales, M. ; Grotewold, E. ; Gutiérrez, R.A. ; Krämer, U. ; Krouk, G. ; Ma, S.L. ; Markelz, R.J.C. ; Megraw, M. ; Meyers, B.C. ; Murray, J.A.H. ; Provart, N.J. ; Rhee, S. ; Smith, R. ; Spalding, E.P. ; Taylor, C. ; Teal, T.K. ; Torii, K.U. ; Town, C. ; Vaughn, M. ; Vierstra, R. ; Ware, D. ; Wilkins, O. ; Williams, C. ; Brady, S.M.
Plant Physiol. 175, 1499-1509 (2017)
Garcia-Molina, A. ; Altmann, M. ; Alkofer, A. ; Epple, P.M. ; Dangl, J.L. ; Falter-Braun, P.
J. Exp. Bot. 68, 1185-1197 (2017)
Falter-Braun, P. ; Calderwood, M.A.
Curr. Opin. Syst. Biol. 4, iv-vi (2017)
Alessandrini, F. ; Vennemann, A. ; Gschwendtner, S. ; Neumann, A.U. ; Rothballer, M. ; Seher, T. ; Wimmer, M. ; Kublik, S. ; Traidl-Hoffmann, C. ; Schloter, M. ; Wiemann, M. ; Schmidt-Weber, C.B.
Nanomaterials 7:300 (2017)
Tanwer, P. ; Bauer, S. ; Heinrichs, E. ; Panda, G. ; Saluja, D. ; Rudel, T. ; Beier, D.
Microbiol-SGM 163, 1081-1092 (2017)
Sheng, H. ; Harir, M. ; Boughner, L.A. ; Jiang, X. ; Schmitt-Kopplin, P. ; Schroll, R. ; Wang, F.
Sci. Total Environ. 605-606, 1031-1038 (2017)
Sun, H. ; Koal, P. ; Gerl, G. ; Schroll, R. ; Joergensen, R.G. ; Munch, J.C.
Chem. Biol. Technol. Agric. 4:15 (2017)
Domínguez-Garay, A. ; Quejigo, J.R. ; Dörfler, U. ; Schroll, R. ; Esteve-Núñez, A.
Microb. Biotechnol. 11, 50-62 (2017)
Liu, D. ; Keiblinger, K.M. ; Schindlbacher, A. ; Wegner, U. ; Sun, H. ; Fuchs, S. ; Lassek, C. ; Riedel, K. ; Zechmeister-Boltenstern, S.
Appl. Soil Ecol. 117-118, 196-202 (2017)

2016

Steiner, A. et al. Cell cycle-regulated PLEIADE/AtMAP65-3 links membrane and microtubule dynamics during plant cytokinesis. Plant J. 88, 531–541 (2016).

Yazaki, J. et al. Mapping transcription factor interactome networks using HaloTag protein arrays. Proc. Natl. Acad. Sci. U. S. A. 113, E4238-47 (2016).

Yachie, N. et al. Pooled-matrix protein interaction screens using Barcode Fusion Genetics. Mol. Syst. Biol. 12, 863 (2016).

Barton, A. K. et al. Procalcitonin Under the Course of Budesonide Inhalation Therapy in Recurrent Airway Obstruction. J. Equine Vet. Sci. 45, 58–63 (2016).

Glaeser, S. P. et al. Non-pathogenic Rhizobium radiobacter F4 deploys plant beneficial activity independent of its host Piriformospora indica. ISME J. 10, 871–884 (2016).

Diesner, S. C. et al. A distinct microbiota composition is associated with protection from food allergy in an oral mouse immunization model. Clin. Immunol. 173, 10–18 (2016).

Schikora, A. et al. Beneficial effects of bacteria-plant communication based on quorum sensing molecules of the N-acyl homoserine lactone group. Plant Mol. Biol. 90, 605–612 (2016).

Han, S. et al. Systemic Responses of Barley to the 3-hydroxy-decanoyl-homoserine Lactone Producing Plant Beneficial Endophyte Acidovorax radicis N35. Front. Plant Sci. 7, 1868 (2016).

Bensidhoum, L. et al. Systemic Responses of Barley to the 3-hydroxy-decanoyl-homoserine Lactone Producing Plant Beneficial Endophyte Acidovorax radicis N35. Eur. J. Soil Biol. 75, 38–46 (2016).

Palacios, O. A. et al. Enhancement of thiamine release during synthetic mutualism between Chlorella sorokiniana and Azospirillum brasilense growing under stress conditions. J. Appl. Phycol. 28, 1521–1531 (2016).

2015

Kalinowska, K. et al. Arabidopsis ALIX is required for the endosomal localization of the deubiquitinating enzyme AMSH3. Proc. Natl. Acad. Sci. U. S. A. 112, E5543-51 (2015).

Marín-de la Rosa N. et al. Primer on Protein–Protein Interaction Maps  eLS 1–9 (American Cancer Society, 2015). doi:10.1002/9780470015902.a0006205.pub2

Hao, Y. et al. Semi-supervised Learning Predicts Approximately One Third of the Alternative Splicing Isoforms as Functional Proteins. Cell Rep. 12, 183–189 (2015).

Kolb, C. et al. FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis. Plant Physiol. 167, 1361–1373 (2015).

Stets, M. I. et al. Quantification of Azospirillum brasilense FP2 Bacteria in Wheat Roots by  Strain-Specific Quantitative PCR. Appl. Environ. Microbiol. 81, 6700–6709 (2015).

Zeiller, M. et al. Systemic colonization of clover (Trifolium repens) by Clostridium botulinum strain 2301. Front. Microbiol. 6, 1207 (2015).

Chowdhury, S. P. et al. Biocontrol mechanism by root-associated Bacillus amyloliquefaciens FZB42 - a review. Front. Microbiol. 6, 780 (2015).

Jha, B. et al. Zhihengliuella somnathii sp. nov., a halotolerant actinobacterium from the rhizosphere of a halophyte Salicornia brachiata. Int. J. Syst. Evol. Microbiol. 65, 3137–3142 (2015).

Rothballer, M. et al. Monophyletic group of unclassified gamma-Proteobacteria dominates in mixed culture biofilm of high-performing oxygen reducing biocathode. Bioelectrochemistry 106, 167–176 (2015).

Gotz-Rosch, C. et al. Influence of bacterial N-acyl-homoserine lactones on growth parameters, pigments, antioxidative capacities and the xenobiotic phase II detoxification enzymes in barley and yam bean. Front. Plant Sci. 6, 205 (2015).

Dahdah, K.et al. Caracterisation d'une souche d' actinobacterie, dietzia sp., productrice de metabolites d'interet agricole. Rev. Microbiol. Ind. Sanit. Environnementale Citefactor, 1–19 (2015).

Teschner, D.et al. Procalcitonin in horses with an acute colic. Pferdeheilkunde 31, 371–377 (2015).

2014

Rolland, T. et al. A proteome-scale map of the human interactome network. Cell 159, 1212–1226 (2014).

Wessling, R. et al. Convergent targeting of a common host protein-network by pathogen effectors from  three kingdoms of life. Cell Host Microbe 16, 364–375 (2014).

Jarsch, I. K. et al. Plasma Membranes Are Subcompartmentalized into a Plethora of Coexisting and Diverse Microdomains in Arabidopsis and Nicotiana benthamiana. Plant Cell (2014). doi:10.1105/tpc.114.124446

Arango, L. et al. Effects of glyphosate on the bacterial community associated with roots of transgenic Roundup Ready® soybean. Eur. J. Soil Biol. 63, 41–48 (2014).

Nabti, E. et al. Growth stimulation of barley and biocontrol effect on plant pathogenic fungi by a Cellulosimicrobium sp. strain isolated from salt-affected rhizosphere soil in northwestern Algeria. Eur. J. Soil Biol. 61, 20–26 (2014).

Hartmann, A. et al. Bacterial quorum sensing compounds are important modulators of microbe-plant  interactions. Front. Plant Sci. 5, 131 (2014).

Buddrus-Schiemann, K. et al. Analysis of N-acylhomoserine lactone dynamics in continuous cultures of Pseudomonas putida IsoF by use of ELISA and UHPLC/qTOF-MS-derived measurements and mathematical models. Anal. Bioanal. Chem. 406, 6373–6383 (2014).

Walker, A. et al. Importance of sulfur-containing metabolites in discriminating fecal extracts between normal and type-2 diabetic mice. J. Proteome Res. 13, 4220–4231 (2014).

Rieger, M. et al. A new ELISA for the quantification of equine procalcitonin in plasma as potential inflammation biomarker in horses. Anal. Bioanal. Chem. 406, 5507–5512 (2014).

Walker, A. et al. Distinct signatures of host-microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet. ISME J. 8, 2380–2396 (2014).

Montero-Calasanz, M. del C. et al. Chryseobacterium oleae sp. nov., an efficient plant growth promoting bacterium in the rooting induction of olive tree (Olea europaea L.) cuttings and emended descriptions of the genus Chryseobacterium, C. daecheongense, C. gambrini, C. gleum, C. joostei, C. jejuense, C. luteum, C. shigense, C. taiwanense, C. ureilyticum and C. vrystaatense. Syst. Appl. Microbiol. 37, 342–350 (2014).

Hofmann, A. et al. Colonization of plants by human pathogenic bacteria in the course of organic vegetable production. Front. Microbiol. 5, 191 (2014).

Rascher, D. et al. Total internal reflection (TIRF)-based quantification of procalcitonin for sepsis diagnosis--a point-of-care testing application. Biosens. Bioelectron. 59, 251–258 (2014).

Rouws, L. F. M. et al. Endophytic Bradyrhizobium spp. isolates from sugarcane obtained through different culture strategies. Environ. Microbiol. Rep. 6, 354–363 (2014).

Sieper, T. et al. N-acyl-homoserine lactone uptake and systemic transport in barley rest upon active parts of the plant. New Phytol. 201, 545–555 (2014).

Daniel, H. et al. High-fat diet alters gut microbiota physiology in mice. ISME J. 8, 295–308 (2014).

Budiharjo, A. et al. Transposon Mutagenesis of the Plant-Associated Bacillus amyloliquefaciens ssp. plantarum FZB42 Revealed That the nfrA and RBAM17410 Genes Are Involved in Plant-Microbe-Interactions. PLoS One 9, 1–13 (2014).

2013

Braun, P. Reproducibility restored--on toward the human interactome. Nat. Methods 10, 301,303 (2013).

Braun, P. et al. Plant protein interactomes. Annu. Rev. Plant Biol. 64, 161–187 (2013).

Straub, D. et al. The genome of the endophytic bacterium H. frisingense GSF30(T) identifies diverse  strategies in the Herbaspirillum genus to interact with plants. Front. Microbiol. 4, 168 (2013).

Jha, B. et al. Quorum sensing inhibition by Asparagopsis taxiformis, a marine macro alga:  separation of the compound that interrupts bacterial communication. Mar. Drugs 11, 253–265 (2013).

Wibberg, D. et al. Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. J. Biotechnol. 167, 142–155 (2013).

Montero-Calasanz, M. del C. et al. Chryseobacterium hispalense sp. nov., a plant-growth-promoting bacterium isolated from a rainwater pond in an olive plant nursery, and emended descriptions of Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Chryseobacterium gregarium. Int. J. Syst. Evol. Microbiol. 63, 4386–4395 (2013).

Alqueres, S. et al. The bacterial superoxide dismutase and glutathione reductase are crucial for endophytic colonization of rice roots by Gluconacetobacter diazotrophicus PAL5. Mol. Plant. Microbe. Interact. 26, 937–945 (2013).

Wang, F. et al. Soil remediation with a microbial community established on a carrier: strong hints for microbial communication during 1,2,4-Trichlorobenzene degradation. Chemosphere 92, 1403–1409 (2013).

J Bot, P. et al. Plant-beneficial rhizobacteria for sustainable increased yield of cotton with reduced level of chemical fertilizers. Pakistan J. Bot. 45, 655–662 (2013).

Chowdhury, S. P. et al. Effects of Bacillus amyloliquefaciens FZB42 on Lettuce Growth and Health under Pathogen Pressure and Its Impact on the Rhizosphere Bacterial Community. PLoS One 8, 1–10 (2013).

2012

Gulbahce, N. et al. Viral perturbations of host networks reflect disease etiology. PLoS Comput. Biol. 8, e1002531 (2012).

Braun, P. et al. History of protein-protein interactions: from egg-white to complex networks. Proteomics 12, 1478–1498 (2012).

Braun, P. Interactome mapping for analysis of complex phenotypes: insights from benchmarking binary interaction assays. Proteomics 12, 1499–1518 (2012).

Mcdermott, J. E. et al. Modeling host-pathogen interactions: computational biology and bioinformatics for infectious disease research . Biocomputing 2012 283–286 doi:10.1142/9789814366496_0027

Trejo, A. et al. Recycling waste debris of immobilized microalgae and plant growth-promoting bacteria from wastewater treatment as a resource to improve fertility of eroded desert soil. Environ. Exp. Bot. 75, 65–73 (2012).

Hense, B. A. et al. Spatial heterogeneity of autoinducer regulation systems. Sensors (Basel). 12, 4156–4171 (2012).

Kremmer, E. et al. A new strategy for the development of monoclonal antibodies for the determination of human procalcitonin in serum samples. Anal. Bioanal. Chem. 402, 989–995 (2012).

Kellermann, C. et al. Microbial CO2 fixation potential in a tar-oil-contaminated porous aquifer. FEMS Microbiol. Ecol. 81, 172–187 (2012).

Hartmann, A. et al. Quorum sensing of bacteria and trans-kingdom interactions of N-acyl homoserine lactones with eukaryotes. J. Chem. Ecol. 38, 704–713 (2012).

Hochwind, K. et al. Draft genome sequence of Lactobacillus casei W56. J. Bacteriol. 194, 6638 (2012).

Timmers, R. A. et al. Microbial community structure elucidates performance of Glyceria maxima plant microbial fuel cell. Appl. Microbiol. Biotechnol. 94, 537–548 (2012).

Li, D. et al. Phenotypic variation in Acidovorax radicisN35 influences plant growth promotion. FEMS Microbiol. Ecol. 79, 751–762 (2012).

Kaestli, M. et al. Out of the ground: aerial and exotic habitats of the melioidosis bacterium Burkholderia pseudomallei in grasses in Australia. Environ. Microbiol. 14, 2058–2070 (2012).

Varma, A. et al. Piriformospora indica: A Novel Plant Growth-Promoting Mycorrhizal Fungus. Agric. Res. 1, 117–131 (2012).

Fischer, D. et al. Molecular characterisation of the diazotrophic bacterial community in uninoculated and inoculated field-grown sugarcane (Saccharum sp.). Plant Soil 356, 83–99 (2012).

Jha, B. et al. The roots of the halophyte Salicornia brachiata are a source of new halotolerant diazotrophic bacteria with plant growth-promoting potential. Plant Soil 356, 265–277 (2012).

2011

Anders, L. et al. A systematic screen for CDK4/6 substrates links FOXM1 phosphorylation to senescence suppression in cancer cells. Cancer Cell 20, 620–634 (2011).

Evidence for network evolution in an Arabidopsis interactome map. Science 333, 601–607 (2011).

Mukhtar, M. S. et al. Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science 333, 596–601 (2011).

Yu, H. et al. Next-generation sequencing to generate interactome datasets. Nat. Methods 8, 478–480 (2011).

Isaza, L. A. et al. Lack of glyphosate resistance gene transfer from Roundup Ready soybean to Bradyrhizobium japonicum under field and laboratory conditions. Z. Naturforsch. C. 66, 595–604 (2011).

de-Bashan, L. E. et al. Cell-cell interaction in the interaction in the eukaryote-prokaryote model of the microalgae Chlorella.Vulgaris and the bacterium Azospirillum.Brasilense immobilized in polymer beads(1). J. Phycol. 47, 1350–1359 (2011).

Gontia, I. et al. Brachybacterium saurashtrense sp. nov., a halotolerant root-associated bacterium  with plant growth-promoting potential. Int. J. Syst. Evol. Microbiol. 61, 2799–2804 (2011).

Li, D. et al. Acidovorax radicis sp. nov., a wheat-root-colonizing bacterium. Int. J. Syst. Evol. Microbiol. 61, 2589–2594 (2011).

Picot, M. et al. Graphite anode surface modification with controlled reduction of specific aryl diazonium salts for improved microbial fuel cells power output. Biosens. Bioelectron. 28, 181–188 (2011).

2010

Bastow, R. et al. An international bioinformatics infrastructure to underpin the Arabidopsis community. Plant Cell 22, 2530–2536 (2010).

Dreze, M. et al. High-quality binary interactome mapping. Methods Enzymol. 470, 281–315 (2010).

Braun, P. et al. Reply to "Exhaustive benchmarking of the yeast two-hybrid system" Nat. Methods 7, 668 (2010).

Müller, A. A. et al. Listeria seeligeri isolates from food processing environments form two phylogenetic  lineages. Appl. Environ. Microbiol. 76, 3044–3047 (2010).

Engel, A. S. et al. Linking phylogenetic and functional diversity to nutrient spiraling in microbial  mats from Lower Kane Cave (USA). ISME J. 4, 98–110 (2010).

Barbarossa, M. V. et al. A delay model for quorum sensing of Pseudomonas putida. Biosystems. 102, 148–156 (2010).

Chen, X. et al. Development and characterization of rat monoclonal antibodies for N-acylated homoserine lactones. Anal. Bioanal. Chem. 398, 2655–2667 (2010).

Buddrus-Schiemann, K. et al. Root colonization by Pseudomonas sp. DSMZ 13134 and impact on the indigenous rhizosphere bacterial community of barley. Microb. Ecol. 60, 381–393 (2010).

Fekete, A. et al. Dynamic regulation of N-acyl-homoserine lactone production and degradation in Pseudomonas putida IsoF. FEMS Microbiol. Ecol. 72, 22–34 (2010).

Chen, X. et al. Detection of quorum sensing molecules in Burkholderia cepacia culture supernatants with enzyme-linked immunosorbent assays. Anal. Bioanal. Chem. 398, 2669–2676 (2010).

Nabti, E. et al. Restoration of Growth of Durum Wheat (Triticum durum var. waha) Under Saline Conditions Due to Inoculation with the Rhizosphere Bacterium Azospirillum brasilense NH and Extracts of the Marine Alga Ulva lactuca. J. Plant Growth Regul. 29, 6–22 (2010).

2009

Braun, P. et al. An experimentally derived confidence score for binary protein-protein interactions. Nat. Methods 6, 91–97 (2009).

Simonis, N. et al. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Nat. Methods 6, 47–54 (2009).

Cusick, M. E. et al. Literature-curated protein interaction datasets. Nat. Methods 6, 39–46 (2009).

Venkatesan, K. et al. An empirical framework for binary interactome mapping. Nat. Methods 6, 83–90 (2009)

Oliveira, A. L. M. et al. Colonization of sugarcane plantlets by mixed inoculations with diazotrophic bacteria. Eur. J. Soil Biol. 45, 106–113 (2009).

Jha, B. et al. Isolation, partial identification and application of diazotrophic rhizobacteria from traditional Indian rice cultivars. Eur. J. Soil Biol. 45, 62–72 (2009).

Chowdhury, S. P. et al. Diversity of 16S-rRNA and nifH genes derived from rhizosphere soil and roots of an endemic drought tolerant grass, Lasiurus sindicus. Eur. J. Soil Biol. 45, 114–122 (2009).

Getenga, Z. et al. Atrazine and terbuthylazine mineralization by an Arthrobacter sp. isolated from a sugarcane-cultivated soil in Kenya. Chemosphere 77, 534–539 (2009).

Rosenberg, K. et al. Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana. ISME J. 3, 675–684 (2009).

Hartmann, A. et al. Plant-driven selection of microbes. Plant Soil 321, 235–257 (2009).

Malik, A. K. et al. Single drop microextraction of homoserine lactones based quorum sensing signal molecules, and the separation of their enantiomers using gas chromatography mass spectrometry in the presence of biological matrices. Microchim. Acta 166, 101–107 (2009).

2008

Yu, H. et al. High-quality binary protein interaction map of the yeast interactome network. Science 322, 104–110 (2008).

Braun, P. et al. Networking metabolites and diseases. Proc. Natl. Acad. Sci. U. S. A. 105, 9849–9850 (2008).

Ekschmitt, K. et al. Soil-carbon preservation through habitat constraints and biological limitations on decomposer activity. J. Plant Nutr. Soil Sci. 171, 27–35 (2008).

von Rad, U. et al. Response of Arabidopsis thaliana to N-hexanoyl-DL-homoserine-lactone, a bacterial quorum sensing molecule produced in the rhizosphere. Planta 229, 73–85 (2008).

Ernst, D. et al. Molecular investigations of the soil, rhizosphere and transgenic glufosinate-resistant rape and maize plants in combination with herbicide (Basta) application under field conditions. Z. Naturforsch. C. 63, 864–872 (2008).

Barriuso, J. et al. Transgenic tomato plants alter quorum sensing in plant growth-promoting rhizobacteria. Plant Biotechnol. J. 6, 442–452 (2008).

Sharma, M. et al. Detection and identification of bacteria intimately associated with fungi of the  order Sebacinales. Cell. Microbiol. 10, 2235–2246 (2008).

Rothballer, M. et al. Endophytic root colonization of gramineous plants by Herbaspirillum frisingense. FEMS Microbiol. Ecol. 66, 85–95 (2008).

Wagner, T. et al. The Probability of a Horizontal Gene Transfer from Roundup Ready® Soybean to Root Symbiotic Bacteria: A Risk Assessment Study on the GSF Lysimeter Station. Water Air Soil Pollut. Focus 8, 155–162 (2008).

Hartmann, A. et al. a pioneer in rhizosphere microbial ecology and soil bacteriology research. Plant Soil 312, 7–14 (2008).

2007

Chowdhury, S. P. et al. Identification of diazotrophs in the culturable bacterial community associated with roots of Lasiurus sindicus, a perennial grass of Thar Desert, India. Microb. Ecol. 54, 82–90 (2007).

Meisinger, D. B. et al. In situ detection of novel Acidobacteria in microbial mats from a chemolithoautotrophically based cave ecosystem (Lower Kane Cave, WY, USA). Environ. Microbiol. 9, 1523–1534 (2007).

Hense, B. A. et al. Does efficiency sensing unify diffusion and quorum sensing? Nat. Rev. Microbiol. 5, 230–239 (2007).

Gotz, C. et al. Uptake, degradation and chiral discrimination of N-acyl-D/L-homoserine lactones by barley (Hordeum vulgare) and yam bean (Pachyrhizus erosus) plants. Anal. Bioanal. Chem. 389, 1447–1457 (2007).

Fekete, A. et al. Identification of bacterial N-acylhomoserine lactones (AHLs) with a combination of ultra-performance liquid chromatography (UPLC), ultra-high-resolution mass spectrometry, and in-situ biosensors. Anal. Bioanal. Chem. 387, 455–467 (2007).

Bertaux, J. et al. Routine fluorescence in situ hybridization in soil. J. Microbiol. Methods 69, 451–460 (2007).

Levy, W. et al. Harsh summer conditions caused structural and specific functinal changes of microbial communities in an arable soil. Eur J Soil Sci 58: 736-745. Eur. J. Soil Sci. 58, 736–745 (2007).

Nabti, E. et al. A Halophilic and Osmotolerant Azospirillum brasilense Strain from Algerian Soil Restores Wheat Growth under Saline Conditions. Eng. Life Sci. 7, 354–360 (2007).

Selesi, D. et al. Quantification of bacterial RubisCO genes in soils by cbbL targeted real-time PCR. J. Microbiol. Methods 69, 497–503 (2007).

Wang, F. et al. Isolation and characterization of 1,2,4-trichlorobenzene mineralizing Bordetella  sp. and its bioremediation potential in soil. Chemosphere 67, 896–902 (2007).

2006

Braun P. et al. QUICKstep and GS-TAP: new moves for protein-interaction analysis. Nat Methods. 2006;3(12):975-976. doi:10.1038/nmeth1206-975

Braun, P. et al. in Cell Biology (Third Edition) (ed. Celis, J. E.) 73–77 (Academic Press, 2006). doi:https://doi.org/10.1016/B978-012164730-8/50196-9

Schuhegger, R. et al. Induction of systemic resistance in tomato by N-acyl-L-homoserine lactone-producing rhizosphere bacteria. Plant. Cell Environ. 29, 909–918 (2006).

Rothballer, M. et al. Herbaspirillum hiltneri sp. nov., isolated from surface-sterilized wheat roots. Int. J. Syst. Evol. Microbiol. 56, 1341–1348 (2006).

Muller, J. et al. Cell-cell communication by quorum sensing and dimension-reduction. J. Math. Biol. 53, 672–702 (2006).

Li, X. et al. Development and application of a method for the analysis of N-acylhomoserine lactones by solid-phase extraction and ultra high pressure liquid chromatography. J. Chromatogr. A 1134, 186–193 (2006).

Ochrobactrum species. Syst. Appl. Microbiol. 29, 265–275 (2006).

Bathe, S. et al. Genetic and phenotypic microdiversity of Ochrobactrum spp. FEMS Microbiol. Ecol. 56, 272 280 (2006).

Gantner, S. et al. In situ quantitation of the spatial scale of calling distances and population density-independent N-acylhomoserine lactone-mediated communication by rhizobacteria colonized on plant roots. FEMS Microbiol. Ecol. 56, 188–194 (2006).

Kutter, S. et al. Colonization of Barley (Hordeum vulgare) with Salmonella enterica and Listeria spp. FEMS Microbiol. Ecol. 56, 262–271 (2006).

2005

Stein, S. et al. Microbial activity and bacterial composition of H2-treated soils with net CO2 fixation. Soil Biol. Biochem. 37, 1938–1945 (2005).

Selesi, D. et al. Diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils. Appl. Environ. Microbiol. 71, 175–184 (2005).

Schmid, M. W. et al. Evolutionary history of the genus Listeria and its virulence genes. Syst. Appl. Microbiol. 28, 1–18 (2005).

 Schmid, M. W. et al. Development and application of oligonucleotide probes for in situ detection of thermotolerant Campylobacter in chicken faecal and liver samples. Int. J. Food Microbiol. 105, 245–255 (2005).

Rothballer, M. et al. Comparative in situ analysis of ipdC-gfpmut3 promoter fusions of Azospirillum brasilense strains Sp7 and Sp245. Environ. Microbiol. 7, 1839–1846 (2005).

Pritsch, K. et al. Mycorrhizosphere responsiveness to atmospheric ozone and inoculation with Phytophthora citricola in a phytotron experiment with spruce/beech mixed cultures. Plant Biol. (Stuttg). 7, 718–727 (2005).

Laturnus, F. et al. Natural formation and degradation of chloroacetic acids and volatile organochlorines in forest soil--challenges to understanding. Environ. Sci. Pollut. Res. Int. 12, 233–244 (2005).

Herschkovitz, Y. et al. Inoculation with the plant-growth-promoting rhizobacterium Azospirillum brasilense causes little disturbance in the rhizosphere and rhizoplane of maize (Zea mays). Microb. Ecol. 50, 277–288 (2005).

Frommberger, M. et al. Analysis of N-acylhomoserine lactones after alkaline hydrolysis and anion-exchange solid-phase extraction by capillary zone electrophoresis-mass spectrometry. Electrophoresis 26, 1523–1532 (2005).

Courty, P.-E. et al. Activity profiling of ectomycorrhiza communities in two forest soils using multiple enzymatic tests. New Phytol. 167, 309–319 (2005).

Bertaux, J. et al. Occurrence and distribution of endobacteria in the plant-associated mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N. Environ. Microbiol. 7, 1786–1795 (2005).

Berg, G. et al. The rhizosphere as a reservoir for opportunistic human pathogenic bacteria. Environ. Microbiol. 7, 1673–1685 (2005).

dos Santos Azevedo, M. et al. Influence of soil and host plant crop on the genetic diversity of Azospirillum amazonense isolates. Pedobiologia (Jena). 49, 565–576 (2005).

Miltner, A. et al. Non-phototrophic CO2 fixation by soil microorganisms. Plant Soil - PLANT SOIL 269, 193–203 (2005).

2004

Reis, V. M. et al. Burkholderia tropica sp. nov., a novel nitrogen-fixing, plant-associated bacterium. Int. J. Syst. Evol. Microbiol. 54, 2155–2162 (2004).

Pritsch, K. et al. A rapid and highly sensitive method for measuring enzyme activities in single mycorrhizal tips using 4-methylumbelliferone-labelled fluorogenic substrates in a microplate system. J. Microbiol. Methods 58, 233–241 (2004).

Frommberger, M. et al. A simple and robust set-up for on-column sample preconcentration - Nano-liquid chromatography - Electrospray ionization mass spectrometry for the analysis of N-acylhomoserine lactones. Anal. Bioanal. Chem. 378, 1014–1020 (2004).

2003

Braun, P. et al. High throughput protein production for functional proteomics. Trends Biotechnol. 21, 383–388 (2003).

Schmid, M. et al. Nucleic acid-based, cultivation-independent detection of Listeria spp and genotypes of L monocytogenes. FEMS Immunol. Med. Microbiol. 35, 215–225 (2003).

Metz, S. et al. Detection methods for the expression of the dissimilatory copper-containing nitrite reductase gene (DnirK) in environmental samples. J. Microbiol. Methods 55, 41–50 (2003).

Frommberger, M. et al. Analysis of N-acyl-L-homoserine lactones produced by Burkholderia cepacia with partial filling micellar electrokinetic chromatography--electrospray ionization-ion trap mass spectrometry. Electrophoresis 24, 3067–3074 (2003).

Bertaux, J. et al. In situ identification of intracellular bacteria related to Paenibacillus spp. in the mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N. Appl. Environ. Microbiol. 69, 4243–4248 (2003).

Lucas, J. et al. Colonization of pepper roots by a plant growth promoting Pseudomonas fluorescens strain. Biol. Fertil. Soils 37, 381–385 (2003).

Rothballer, M. et al. In situ Localization and PGPR-Effect of Azospirillum brasilense Strains Colonizing Roots of Different Wheat Varieties. Symbiosis 34, 261–279 (2003).

2002

Podgrabinska, S. et al. Molecular characterization of lymphatic endothelial cells. Proc. Natl. Acad. Sci. U. S. A. 99, 16069–16074 (2002).

Braun, P. et al. Proteome-scale purification of human proteins from bacteria. Proc. Natl. Acad. Sci. U. S. A. 99, 2654–2659 (2002).

Jontofsohn, M. et al. Influence of nonylphenol on the microbial community of lake sediments in microcosms. Sci. Total Environ. 285, 3–10 (2002).

Jontofsohn, M. et al. Bacterial community structure in Lake sediments of microcosms contaminated with nonylphenol. J. Soils Sediments 2, 211–215 (2002).

Emmerling, C. et al. Functional diversity of soil organisms - A review of recent research activities in Germany. J. Plant Nutr. Soil Sci. - J PLANT NUTR SOIL SCI 165, (2002).

Metz, S. et al. Development and Characterization of Murine Monoclonal Antibodies Specific for Dissimilatoric Copper Nitrite Reductase. Hybrid. Hybridomics 21, 351–357 (2002).

2001

Brizuela, L. et al. FLEXGene repository: from sequenced genomes to gene repositories for high-throughput functional biology and proteomics. Mol. Biochem. Parasitol. 118, 155–165 (2001).

Eisenhardt, D. et al. Cloning of a catalytic subunit of cAMP-dependent protein kinase from the honeybee (Apis mellifera) and its localization in the brain. Insect Mol. Biol. 10, 173–181 (2001).

Steidle, A. et al. Visualization of N-Acylhomoserine Lactone-Mediated Cell-Cell Communication between Bacteria Colonizing the Tomato Rhizosphere. Appl. Environ. Microbiol. 67, 5761–5770 (2001).

Stoffels, M. et al. Design and Application of New 16S rRNA-targeted Oligonucleotide Probes for the Azospirillum-Skermanella-Rhodocista-Cluster. Syst. Appl. Microbiol. 24, 83–97 (2001).

Kirchhof, G. et al. Herbaspirillum frisingense sp. nov., a new nitrogen-fixing bacterial species that occurs in C4-fibre plants. Int. J. Syst. Evol. Microbiol. 51, 157–168 (2001).

Eckert, B. et al. Azospirillum doebereinerae sp. nov., a nitrogen-fixing bacterium associated with  the C4-grass Miscanthus. Int. J. Syst. Evol. Microbiol. 51, 17–26 (2001).

Bach, H. J. et al. PCR primers and functional probes for amplification and detection of bacterial genes for extracellular peptidases in single strains and in soil. J. Microbiol. Methods 44, 173–182 (2001).

2000

Classon, M. et al. Combinatorial roles for pRB, p107, and p130 in E2F-mediated cell cycle control. Proc. Natl. Acad. Sci. U. S. A. 97, 10820–10825 (2000).

Schloter, M. et al. Ecology and evolution of bacterial microdiversity. FEMS Microbiol. Rev. 24, 647–660 (2000).

Lebuhn, M. et al. Taxonomic characterization of Ochrobactrum sp. isolates from soil samples and wheat roots, and description of Ochrobactrum tritici sp. nov. and Ochrobactrum grignonense sp. nov. Int. J. Syst. Evol. Microbiol. 50 Pt 6, 2207–2223 (2000).