Publications

Virus in Nature and Health

  • Khan Mirzaei M, Xue J, Costa R, et al. Challenges of Studying the Human Virome - Relevant Emerging Technologies (2020). Trends Microbiol. doi:10.1016/j.tim.2020.05.021
  • Mirzaei MK, Khan AK, Ghosh P, Taranu ZE, Taguer M, Ru J, Chowdhury R, Kabir MD, Li Deng L, Mondal D and Maurice CF. Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner. (2020) Cell Host & Microbe, 27 (2): 199-212. 
  • Kurmayer R, Entfellner E, Weisse T, Offterdinger M, Rentmeister A, Deng L. Chemically labeled toxins or bioactive peptides show a heterogeneous intracellular distribution and low spatial overlap with autofluorescence in bloom-forming cyanobacteria. (2020). Sci Rep. doi:10.1038/s41598-020-59381-w
  • Jiang Y, Huang H, Ma T, Ru J, Blank S, Kurmayer R, Deng L. Temperature Response of Planktonic Microbiota in Remote Alpine Lakes. (2019). Front Microbiol. doi:10.3389/fmicb.2019.01714
  • Ma T, Jiang J, Elbehery AHA, Blank S, Kurmayer R,  Deng L*. Resilience of planktonic bacterial community structure in response to short-term weather deterioration during the growing season in an alpine lake. (2020) Hydrobiologia , 847: 535–548
  • Dzunkova M, Low SJ, Daly JN, Deng L, RinkeC, Hugenholtz P. Defining the human gut host-phage network through single-cell viral tagging. (2019) Nature Microbiology, 4(12):2192-2203.
  • Simon LM, Karg S, Westermann A J, Engel M, Elbehery AHA, Hense B, Heinig M, Deng L, Theis F J. (2018). MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data. GigaScience giy070.
  • Elbehery AHA, Feichtmayer J, Singh D, Griebler C & Deng L. The Human Virome Protein Cluster Database (HVPC): A Human Viral Metagenomic Database for Diversity and Function Annotation. (2018). Frontiers in Microbiology , doi:10.3389/fmicb.2018.01110
  • Ibrahim B,  McMahon DP, Hufsky F, Beer M, Deng L, Le Mercier P. Palmarini M, Thiel V, Marz M. A new era of virus bioinformatics. (2018) Virus Research 251: 86-90.
  • Hufsky F, Ibrahim B, Beer M, Deng L, Le Mercier P, McMahon D, Palmarini M, Thiel V and Marz M: Virologists - heroes need weapons. (2018). Plos Pathogenes, 14(2): e1006771.
  • Feichtmayer J, Deng L & Griebler, C. (2017). Antagonistic Microbial Interactions: Contributions and Potential Applications for Controlling Pathogens in the Aquatic Systems. Frontiers in Microbiology 8, doi:10.3389/fmicb.2017.02192
  • Kurmayer R, Blom JF*, Deng L*, Pernthaler J. (2015) Phylogeny, ecological adaptation and geographic distance determine toxic or bioactive oligopeptid composition in bloom-forming cyanobacteria, ISME 9, 909-921.
  • Deng L*, Ignacio-Espinoza JS*, Gregory A, Poulos PT, Weitz JS, Hugenholtz P, Sullivan MB. (2014) Viral-tagged metagenomics reveals environmental cyanophage populations are discretely clustered, Nature 513, 242-245.
  • (News: Dyeing to Learn More About Marine Viruses jgi.doe.gov/dyeing-learn-marine-viruses/; Tiniest Catch: UA Scientists' Fishing Expedition Reveals Viral Diversity in the Sea: uanews.org/story/tiniest-catch-ua-scientists-fishing-expedition-reveals-viral-diversity-in-the-sea; and in German: www.helmholtz-muenchen.de/en/news/latest-news/press-information-news/article/24591/index.html)
  • Deng L*, Krauss S*, Feichtmayer J, Hofmann R, Arndt H and Griebler C. (2014) Grazing of heterotrophic flagellates on viruses is driven by feeding behaviour. Environmental Microbiology Reports 6, 325-330.
  • Hurwitz B, Deng L, Poulos BP, Sullivan MB. (2013) Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics. Environmental Microbiology 15, 1428-1440.
  • Deng L, Gregory A, Yilmaz S, Poulos B, Hugenholtz P, Sullivan MB. (2012)  Contrasting life strategies of viruses that infect photo- and hetero- trophic bacteria revealed by viral-tagging. mBio 3, e00373-12. doi:10.1128/mBio.00373-12. (Recommended by Faculty 1000, 2013)
  • Duhaime MB, Deng L, Poulos BT, Sullivan MB. (2012). Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method. Environmental Microbiology 14, 2526-37. 
  • John SG, Mendez CB, Deng L, Poulos B, Kauffman AK, Kern SE, Brum J, Polz MF, Boyle EA, Sullivan MB. (2011)  A simple and efficient method for concentration of ocean viruses by chemical flocculation. Environmental Microbiology Reports 3, 195-202.

*authors contributed equally